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The map label for this gene is smpB

Identifier: 38233356

GI number: 38233356

Start: 726536

End: 727027

Strand: Direct

Name: smpB

Synonym: DIP0750

Alternate gene names: 38233356

Gene position: 726536-727027 (Clockwise)

Preceding gene: 38233355

Following gene: 38233357

Centisome position: 29.19

GC content: 50.61

Gene sequence:

>492_bases
ATGGCAAAGAAGAAAAAGGCGAAGAATAGCAACCCAGTTATTGCTTCTAACCGAAAAGCGCGGCATGACTACAAGATTTT
GGACACCTTCGAGTGTGGAATCGTGCTGTTGGGAACCGAAATCAAGTCGATCCGTGAGGGCAAAGTATCCCTCACCGACT
CCTTTGCCACTATCGATGAAGGCGAAGCCTGGATCCGTAATCTCAATATCCCAATCTATTCCCGCGGATCGTGGACGAAC
CACTCGCCAATGCGCACCCGAAAACTTCTTCTGCACCGACGCGAAATTGATTCGCTCATGGGCAAGGTGCGTGACGGAAA
CAAAACTCTGGTTCCATTGTCTTTGTACTTCAAAGAAGGGCGACTCAAAGTGGAACTCGGACTTGCTCAGGGTAAACAGG
ACTACGACAAACGCCAAGACATCAAGCGTCGCACCGAAGAACGAGAAGTGGTTCGCGATCTGGGGCGTCGTGTCAAGGGA
ATCCACGCTTAG

Upstream 100 bases:

>100_bases
CATCCTCATACGCACTGCACATCCCCAAGAAAACCACACGTACCTTTACCGTGGAATTTCTTGGGGATGTGGTGTATTTA
CGGGTACTATCGATGCCACT

Downstream 100 bases:

>100_bases
AAACAGGGGTTGAAAAGCTCACTCCAGCCAGCTAACATTGCTGTTCTACAGTTATTCGTTGTACGGCGACCCAACTGTAG
AAGCACCAACGGGGCTGATT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MAKKKKAKNSNPVIASNRKARHDYKILDTFECGIVLLGTEIKSIREGKVSLTDSFATIDEGEAWIRNLNIPIYSRGSWTN
HSPMRTRKLLLHRREIDSLMGKVRDGNKTLVPLSLYFKEGRLKVELGLAQGKQDYDKRQDIKRRTEEREVVRDLGRRVKG
IHA

Sequences:

>Translated_163_residues
MAKKKKAKNSNPVIASNRKARHDYKILDTFECGIVLLGTEIKSIREGKVSLTDSFATIDEGEAWIRNLNIPIYSRGSWTN
HSPMRTRKLLLHRREIDSLMGKVRDGNKTLVPLSLYFKEGRLKVELGLAQGKQDYDKRQDIKRRTEEREVVRDLGRRVKG
IHA
>Mature_162_residues
AKKKKAKNSNPVIASNRKARHDYKILDTFECGIVLLGTEIKSIREGKVSLTDSFATIDEGEAWIRNLNIPIYSRGSWTNH
SPMRTRKLLLHRREIDSLMGKVRDGNKTLVPLSLYFKEGRLKVELGLAQGKQDYDKRQDIKRRTEEREVVRDLGRRVKGI
HA

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=163, Percent_Identity=44.7852760736196, Blast_Score=129, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_CORDI (Q6NIL8)

Other databases:

- EMBL:   BX248356
- RefSeq:   NP_939123.1
- ProteinModelPortal:   Q6NIL8
- SMR:   Q6NIL8
- GeneID:   2650552
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP0750
- NMPDR:   fig|257309.1.peg.714
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- PhylomeDB:   Q6NIL8
- ProtClustDB:   PRK05422
- BioCyc:   CDIP257309:DIP0750-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18785; Mature: 18654

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKKKAKNSNPVIASNRKARHDYKILDTFECGIVLLGTEIKSIREGKVSLTDSFATIDE
CCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCEEEECCHHHHHHCCCEEECCCCCCCCC
GEAWIRNLNIPIYSRGSWTNHSPMRTRKLLLHRREIDSLMGKVRDGNKTLVPLSLYFKEG
CHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC
RLKVELGLAQGKQDYDKRQDIKRRTEEREVVRDLGRRVKGIHA
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AKKKKAKNSNPVIASNRKARHDYKILDTFECGIVLLGTEIKSIREGKVSLTDSFATIDE
CCCCCCCCCCCEEECCCCCCCCCEEEEECCCCEEEECCHHHHHHCCCEEECCCCCCCCC
GEAWIRNLNIPIYSRGSWTNHSPMRTRKLLLHRREIDSLMGKVRDGNKTLVPLSLYFKEG
CHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC
RLKVELGLAQGKQDYDKRQDIKRRTEEREVVRDLGRRVKGIHA
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910