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The map label for this gene is ybaK [H]

Identifier: 38233315

GI number: 38233315

Start: 683945

End: 684448

Strand: Reverse

Name: ybaK [H]

Synonym: DIP0708

Alternate gene names: 38233315

Gene position: 684448-683945 (Counterclockwise)

Preceding gene: 38233318

Following gene: 38233313

Centisome position: 27.5

GC content: 51.39

Gene sequence:

>504_bases
ATGAGCAAGAAAAAGCCGTCCGGTGCTACACCTGCACTCGCTGTGTTGGAAGCTGCGGGTATCGAGCATTCGGTGTCTAC
TTTTGAAGGTGGCACAGACCATTTTGGTGACGCGGCAGCTGCGGCACTCGACGTAGATTCGGATAGGATTTTTAAAACAC
TGGTCATCGATTTAACTGCGGGTAAAGGACCCAAGCGTCAACTTGCGGTGGCTTGTATTCCGGTGACCTCAAAGTTGAGC
CTAAAAAAGGCGGCGGCTGCGTTGAGCGCGTCAAAAGCCACGATGGCGGACCAACACGATGCGGCTAAGTCGTCAGGTTA
TATTCCTGGCGGTATTTCTCCTATAGGTCAGAAACACCCGCTGCCCACTGTGGTAGATGAGACAGCCATTTTGTTTGACA
CGATTTTTGTTTCCGGCGGCAAACGTGGTCTTGATGTGGAACTCAGTGGCGAAGATCTTATTCGCGTCGTTGACGGAAGT
TTCGCGGATTTACAGGCTGAATAG

Upstream 100 bases:

>100_bases
ACGGTAGCGCGTCACGCTCGAAACGTGCGTCAAGGTCGCTTGTTTTCGTAGCCACTGGTCTCCTTAGATATTGTTAAAAC
CATTCTAGTAGGAGGCATAA

Downstream 100 bases:

>100_bases
ATCCGTGGGGGCGTCGATAAGCTCTGGGTAGTCGTTTCGGATATTTCCCACGCTGGGGTCAGCTAGGCTCGTATGAAAGG
CGGATGCATCGCCGGGAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MSKKKPSGATPALAVLEAAGIEHSVSTFEGGTDHFGDAAAAALDVDSDRIFKTLVIDLTAGKGPKRQLAVACIPVTSKLS
LKKAAAALSASKATMADQHDAAKSSGYIPGGISPIGQKHPLPTVVDETAILFDTIFVSGGKRGLDVELSGEDLIRVVDGS
FADLQAE

Sequences:

>Translated_167_residues
MSKKKPSGATPALAVLEAAGIEHSVSTFEGGTDHFGDAAAAALDVDSDRIFKTLVIDLTAGKGPKRQLAVACIPVTSKLS
LKKAAAALSASKATMADQHDAAKSSGYIPGGISPIGQKHPLPTVVDETAILFDTIFVSGGKRGLDVELSGEDLIRVVDGS
FADLQAE
>Mature_166_residues
SKKKPSGATPALAVLEAAGIEHSVSTFEGGTDHFGDAAAAALDVDSDRIFKTLVIDLTAGKGPKRQLAVACIPVTSKLSL
KKAAAALSASKATMADQHDAAKSSGYIPGGISPIGQKHPLPTVVDETAILFDTIFVSGGKRGLDVELSGEDLIRVVDGSF
ADLQAE

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=157, Percent_Identity=47.1337579617834, Blast_Score=136, Evalue=7e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17100; Mature: 16968

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKKPSGATPALAVLEAAGIEHSVSTFEGGTDHFGDAAAAALDVDSDRIFKTLVIDLTA
CCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHEEEECCCHHEEEEEEEEEEC
GKGPKRQLAVACIPVTSKLSLKKAAAALSASKATMADQHDAAKSSGYIPGGISPIGQKHP
CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCC
LPTVVDETAILFDTIFVSGGKRGLDVELSGEDLIRVVDGSFADLQAE
CCCHHHHHHHHHHHEEECCCCCCEEEEECCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
SKKKPSGATPALAVLEAAGIEHSVSTFEGGTDHFGDAAAAALDVDSDRIFKTLVIDLTA
CCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHEEEECCCHHEEEEEEEEEEC
GKGPKRQLAVACIPVTSKLSLKKAAAALSASKATMADQHDAAKSSGYIPGGISPIGQKHP
CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCC
LPTVVDETAILFDTIFVSGGKRGLDVELSGEDLIRVVDGSFADLQAE
CCCHHHHHHHHHHHEEECCCCCCEEEEECCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]