Click here to switch to the map view.

The map label for this gene is rsgA [H]

Identifier: 38233312

GI number: 38233312

Start: 680972

End: 681979

Strand: Reverse

Name: rsgA [H]

Synonym: DIP0705

Alternate gene names: 38233312

Gene position: 681979-680972 (Counterclockwise)

Preceding gene: 38233313

Following gene: 38233297

Centisome position: 27.4

GC content: 59.72

Gene sequence:

>1008_bases
ATGGCACGCAGAAACTCTCATCGCCAATGGGATGAATCCGACGTACGTGTACGCCCCAGCAAAGGCTCACGCCCCCGTAC
GAAAGACCGCCCGAAGCATGACAACGCTGAATTCGGCATGGTTGTGACCAAAGACCGCGGACGCTGGGGTGTTGTCCTTG
ACGGTCAGGACACACCAGTGGTGTGTATGCGCGCCCGCGAGATGGGGCGCACACCCGTGGAAGTTGGCGATCGAGTAGGA
ATTGTTGGTGATACCTCAGGACGGCCAGGCTCTCTTGCACGCATTGTGAAACTCGCAGAGCGCAGCAGCGTGTTACGGCG
AACTGCAGATGACACCGATCCTTACGAGCGCATTGTTGTTGCCAACGCGCAGCAACTGCTCATCGTCTGCGCCGTTGCCG
ATCCCGCGCCACGCGCAGGTTTTGTCGAACGCGCTCTCGTAGCTGCATTCGTGGGCAATCTTCAGCCAGTGATCTGCCTG
ACCAAATCTGATCTCGCAGACCCCACCGAGTTCGCCTCCGAGTTCGCAGCCCTCAACGTTCCCGTTGTGGTGTGCGGTGT
AGAAGACCCGCTGGAGCCGCTTCAAAAATTCACCCACGGTGCTATTTCTGCGACCATTGGGCATTCTGGGGTAGGCAAAT
CGACGTTGGTAAACCGCCTAGTGCCCTCCGCGGCACGCGAAACCGGTGAGGTATCCGGCGTGGGTAAAGGTCGCCACACC
TCGACTCAAGCCGTCGCATTGCAGTTGCCGGAAGGCGGCTGGATCATCGATACCCCAGGTATCAGATCCTTCGGCCTCGC
CCACGTCGATGCCGATACCGTCATCGGTGTATTTGAAGACCTCCATGAAGCAGTCGAACAATGCCCGCGCGGTTGCACCC
ACATGGGTCGTCCCGCCGACCCCGAATGCGTCCTCGACACTTTCGACGCAGACTCCCCCACTGGTCGCCGCGTTGTCGCG
GTACGCAAGTTGCTCGGCGCCTTGCGCACCAACGTGGATTGGGAATAG

Upstream 100 bases:

>100_bases
CTTGTTGTTGGCGGTGTCCAAGTTGACGACATTGACACGACGTCGAAGACTCTGCCTGGTTTTGCCGATATGTGGCACAC
GATGGTGCGGGGCTAGGTCG

Downstream 100 bases:

>100_bases
ATCAGCGCTGTTGATTTCCCCGCGGCTTGCGCCCTGAATAGATCAAGATGGCATCTTTGATACTCGGGCGCAGGCGTTTG
AGTAGTTTTAGGCCCGTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MARRNSHRQWDESDVRVRPSKGSRPRTKDRPKHDNAEFGMVVTKDRGRWGVVLDGQDTPVVCMRAREMGRTPVEVGDRVG
IVGDTSGRPGSLARIVKLAERSSVLRRTADDTDPYERIVVANAQQLLIVCAVADPAPRAGFVERALVAAFVGNLQPVICL
TKSDLADPTEFASEFAALNVPVVVCGVEDPLEPLQKFTHGAISATIGHSGVGKSTLVNRLVPSAARETGEVSGVGKGRHT
STQAVALQLPEGGWIIDTPGIRSFGLAHVDADTVIGVFEDLHEAVEQCPRGCTHMGRPADPECVLDTFDADSPTGRRVVA
VRKLLGALRTNVDWE

Sequences:

>Translated_335_residues
MARRNSHRQWDESDVRVRPSKGSRPRTKDRPKHDNAEFGMVVTKDRGRWGVVLDGQDTPVVCMRAREMGRTPVEVGDRVG
IVGDTSGRPGSLARIVKLAERSSVLRRTADDTDPYERIVVANAQQLLIVCAVADPAPRAGFVERALVAAFVGNLQPVICL
TKSDLADPTEFASEFAALNVPVVVCGVEDPLEPLQKFTHGAISATIGHSGVGKSTLVNRLVPSAARETGEVSGVGKGRHT
STQAVALQLPEGGWIIDTPGIRSFGLAHVDADTVIGVFEDLHEAVEQCPRGCTHMGRPADPECVLDTFDADSPTGRRVVA
VRKLLGALRTNVDWE
>Mature_334_residues
ARRNSHRQWDESDVRVRPSKGSRPRTKDRPKHDNAEFGMVVTKDRGRWGVVLDGQDTPVVCMRAREMGRTPVEVGDRVGI
VGDTSGRPGSLARIVKLAERSSVLRRTADDTDPYERIVVANAQQLLIVCAVADPAPRAGFVERALVAAFVGNLQPVICLT
KSDLADPTEFASEFAALNVPVVVCGVEDPLEPLQKFTHGAISATIGHSGVGKSTLVNRLVPSAARETGEVSGVGKGRHTS
TQAVALQLPEGGWIIDTPGIRSFGLAHVDADTVIGVFEDLHEAVEQCPRGCTHMGRPADPECVLDTFDADSPTGRRVVAV
RKLLGALRTNVDWE

Specific function: May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover [H]

COG id: COG1162

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 engC GTPase domain [H]

Homologues:

Organism=Escherichia coli, GI87082381, Length=316, Percent_Identity=32.9113924050633, Blast_Score=108, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010914
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004881 [H]

Pfam domain/function: PF03193 DUF258 [H]

EC number: NA

Molecular weight: Translated: 36072; Mature: 35941

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS50936 ENGC_GTPASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRNSHRQWDESDVRVRPSKGSRPRTKDRPKHDNAEFGMVVTKDRGRWGVVLDGQDTPV
CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCE
VCMRAREMGRTPVEVGDRVGIVGDTSGRPGSLARIVKLAERSSVLRRTADDTDPYERIVV
EEEEHHHHCCCCHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEH
ANAQQLLIVCAVADPAPRAGFVERALVAAFVGNLQPVICLTKSDLADPTEFASEFAALNV
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCC
PVVVCGVEDPLEPLQKFTHGAISATIGHSGVGKSTLVNRLVPSAARETGEVSGVGKGRHT
CEEEECCCCHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
STQAVALQLPEGGWIIDTPGIRSFGLAHVDADTVIGVFEDLHEAVEQCPRGCTHMGRPAD
CCEEEEEEECCCCEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCC
PECVLDTFDADSPTGRRVVAVRKLLGALRTNVDWE
CCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ARRNSHRQWDESDVRVRPSKGSRPRTKDRPKHDNAEFGMVVTKDRGRWGVVLDGQDTPV
CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCE
VCMRAREMGRTPVEVGDRVGIVGDTSGRPGSLARIVKLAERSSVLRRTADDTDPYERIVV
EEEEHHHHCCCCHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEH
ANAQQLLIVCAVADPAPRAGFVERALVAAFVGNLQPVICLTKSDLADPTEFASEFAALNV
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCC
PVVVCGVEDPLEPLQKFTHGAISATIGHSGVGKSTLVNRLVPSAARETGEVSGVGKGRHT
CEEEECCCCHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
STQAVALQLPEGGWIIDTPGIRSFGLAHVDADTVIGVFEDLHEAVEQCPRGCTHMGRPAD
CCEEEEEEECCCCEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCC
PECVLDTFDADSPTGRRVVAVRKLLGALRTNVDWE
CCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GTP [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA