Click here to switch to the map view.

The map label for this gene is hypA [H]

Identifier: 38233283

GI number: 38233283

Start: 653056

End: 653421

Strand: Reverse

Name: hypA [H]

Synonym: DIP0676

Alternate gene names: 38233283

Gene position: 653421-653056 (Counterclockwise)

Preceding gene: 38233286

Following gene: 38233276

Centisome position: 26.26

GC content: 55.46

Gene sequence:

>366_bases
ATGCATGAACTTGGACTGTTATCTGGTGTGGTGTCTGCGACGGAATCGTCGATTCCTTCCGGAAAGAATCGACGAGTCCT
TCGGATAGCGCTACGCGTCGGCGCGCGTTCGGGGGCGATTCCGGAGGCCTTGGAAGGCGCGTGGCCGATCGCTTCGAGTG
GCAGTGCATGCGATGGTGCTGAGCTTCTCATTGATTTTATTCCCGCATCGGTGTGGTGTCCGCAGTGTGATGGTGAGGTG
GAAATCGATGAGTTTTTTGCGTTGTGTTGTCCGGTGTGTGGAACCCCGACGGCTGATTTGCGGTCGGGGCGGGAGTTTGA
GATTGCTTGGGTGGATATTGAAGATCCCAAGGACGAAGAACCTTAA

Upstream 100 bases:

>100_bases
CCACCCGAATCGGTGTACACCACCTTGGCTTCGAAGGGATCAACGAACTGATCCAAGCGCAGTGTTGTACTCACTGGTTA
TAGCTCCTCATAATGGTTAT

Downstream 100 bases:

>100_bases
TTCGCGTGGGCGGCTTCGAGACGTTGCCATTCAGCGATGACGTCTCGGGCTGCGTCGGTGGCGGTTTCGATAGCGTCTGT
TACTGCTTGGCTGAGGCCTA

Product: putative hydrogenase nickel incorporation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MHELGLLSGVVSATESSIPSGKNRRVLRIALRVGARSGAIPEALEGAWPIASSGSACDGAELLIDFIPASVWCPQCDGEV
EIDEFFALCCPVCGTPTADLRSGREFEIAWVDIEDPKDEEP

Sequences:

>Translated_121_residues
MHELGLLSGVVSATESSIPSGKNRRVLRIALRVGARSGAIPEALEGAWPIASSGSACDGAELLIDFIPASVWCPQCDGEV
EIDEFFALCCPVCGTPTADLRSGREFEIAWVDIEDPKDEEP
>Mature_121_residues
MHELGLLSGVVSATESSIPSGKNRRVLRIALRVGARSGAIPEALEGAWPIASSGSACDGAELLIDFIPASVWCPQCDGEV
EIDEFFALCCPVCGTPTADLRSGREFEIAWVDIEDPKDEEP

Specific function: Probably plays a role in an hydrogenase nickel cofactor insertion step [H]

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000688
- InterPro:   IPR020538 [H]

Pfam domain/function: PF01155 HypA [H]

EC number: NA

Molecular weight: Translated: 12874; Mature: 12874

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHELGLLSGVVSATESSIPSGKNRRVLRIALRVGARSGAIPEALEGAWPIASSGSACDGA
CCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHCCCCCCCCCCCCCCHH
ELLIDFIPASVWCPQCDGEVEIDEFFALCCPVCGTPTADLRSGREFEIAWVDIEDPKDEE
HHHHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCCEEEEEEEECCCCCCCC
P
C
>Mature Secondary Structure
MHELGLLSGVVSATESSIPSGKNRRVLRIALRVGARSGAIPEALEGAWPIASSGSACDGA
CCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHCCCCCCCCCCCCCCHH
ELLIDFIPASVWCPQCDGEVEIDEFFALCCPVCGTPTADLRSGREFEIAWVDIEDPKDEE
HHHHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCCEEEEEEEECCCCCCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA