Click here to switch to the map view.

The map label for this gene is spr [C]

Identifier: 38233247

GI number: 38233247

Start: 611808

End: 612647

Strand: Reverse

Name: spr [C]

Synonym: DIP0640

Alternate gene names: 38233247

Gene position: 612647-611808 (Counterclockwise)

Preceding gene: 38233248

Following gene: 38233246

Centisome position: 24.62

GC content: 59.76

Gene sequence:

>840_bases
GTGATTAACCTCCCCGGTGTGGTTTCCATGCTGGCCACACTCGCACCCCCGCAGCTTAACCTTGCTATCCCCGAAACCCC
ATCTTTTCCCACCGCCGACCTAATCACGCACGCTTTTGGCACCACCACACCACTTATCCATGCAGCACAAACCCTAGCCG
CCGACGCACACCGCGCACGCAGCGTCATACCCCAAGCACTGCACGAAATAGACAATCTCCGCGCAGAACTCGGTCACATG
GCCACCGACTTTCTAAGCGAGGCCACCCGAATCTTTCCGAAACTCTTTAGCCCCCTGCCGGGATCCGCCCTCGCAGCCCA
TGCCGAGCTTGCAGCCCTACCCGGCAAATACATCGATCTAGCATTCGCACGTCTCGACCTGGCCAATAAAAACCTCACCC
ACGCCACCATGACACTGCTCTCGGTAGCAGATAGGGGCGTCGATACGCGAGGCGAACTCCCACCACCTGCAGCACCCCCT
GCCACTCCACCTGCGTCTCACCTCGGACAACGAGCCGTCGACGCTGCTATGAGCGCCCTAGGCACCCCATACCTGTGGGG
CGGAACAACACTCGCCGGCTTCGACTGCTCCGGATTTACCCAATGGGCATGGCGACAAGCAGGCATTGAGCTGCCCCGAC
TCGCCGAACACCAAAACGTCGGCACACCCGTCGCGCGTGAAAACCTCCAACCAGGCGATCTACTCGTCTGGGACGGCCAC
GTTGCCATGTACGCCGGTAACGGAAACATCATCGAAGCCGGAAACCCCGTCGCACTCAACCCCATCAGAACCACCAACAT
GGGAATGCCGTTTAAAGGTTACTTCCGACCCACAGGGTAG

Upstream 100 bases:

>100_bases
AGCACTGCCACCAAGCAGAAGAACTAGCCGCCACCGCTCACCAGCTTCTCCAAAACGCCGAAGACATCGACGCCGATACT
GCCCGACGAGAGGACACCCT

Downstream 100 bases:

>100_bases
ACCCGCTAAGATGCATAGCCATGGCTAATAAAGGAATCGTACCCGTCAAAATCTCATTGACCGAGGGCGACTTTTACACT
CTCTGGGCACCACAATGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MINLPGVVSMLATLAPPQLNLAIPETPSFPTADLITHAFGTTTPLIHAAQTLAADAHRARSVIPQALHEIDNLRAELGHM
ATDFLSEATRIFPKLFSPLPGSALAAHAELAALPGKYIDLAFARLDLANKNLTHATMTLLSVADRGVDTRGELPPPAAPP
ATPPASHLGQRAVDAAMSALGTPYLWGGTTLAGFDCSGFTQWAWRQAGIELPRLAEHQNVGTPVARENLQPGDLLVWDGH
VAMYAGNGNIIEAGNPVALNPIRTTNMGMPFKGYFRPTG

Sequences:

>Translated_279_residues
MINLPGVVSMLATLAPPQLNLAIPETPSFPTADLITHAFGTTTPLIHAAQTLAADAHRARSVIPQALHEIDNLRAELGHM
ATDFLSEATRIFPKLFSPLPGSALAAHAELAALPGKYIDLAFARLDLANKNLTHATMTLLSVADRGVDTRGELPPPAAPP
ATPPASHLGQRAVDAAMSALGTPYLWGGTTLAGFDCSGFTQWAWRQAGIELPRLAEHQNVGTPVARENLQPGDLLVWDGH
VAMYAGNGNIIEAGNPVALNPIRTTNMGMPFKGYFRPTG
>Mature_279_residues
MINLPGVVSMLATLAPPQLNLAIPETPSFPTADLITHAFGTTTPLIHAAQTLAADAHRARSVIPQALHEIDNLRAELGHM
ATDFLSEATRIFPKLFSPLPGSALAAHAELAALPGKYIDLAFARLDLANKNLTHATMTLLSVADRGVDTRGELPPPAAPP
ATPPASHLGQRAVDAAMSALGTPYLWGGTTLAGFDCSGFTQWAWRQAGIELPRLAEHQNVGTPVARENLQPGDLLVWDGH
VAMYAGNGNIIEAGNPVALNPIRTTNMGMPFKGYFRPTG

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=90, Percent_Identity=41.1111111111111, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 29504; Mature: 29504

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINLPGVVSMLATLAPPQLNLAIPETPSFPTADLITHAFGTTTPLIHAAQTLAADAHRAR
CCCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SVIPQALHEIDNLRAELGHMATDFLSEATRIFPKLFSPLPGSALAAHAELAALPGKYIDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
AFARLDLANKNLTHATMTLLSVADRGVDTRGELPPPAAPPATPPASHLGQRAVDAAMSAL
HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
GTPYLWGGTTLAGFDCSGFTQWAWRQAGIELPRLAEHQNVGTPVARENLQPGDLLVWDGH
CCCEEECCCEEECCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHCCCCCCCEEEECCE
VAMYAGNGNIIEAGNPVALNPIRTTNMGMPFKGYFRPTG
EEEEECCCCEEECCCCEEECCEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MINLPGVVSMLATLAPPQLNLAIPETPSFPTADLITHAFGTTTPLIHAAQTLAADAHRAR
CCCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SVIPQALHEIDNLRAELGHMATDFLSEATRIFPKLFSPLPGSALAAHAELAALPGKYIDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH
AFARLDLANKNLTHATMTLLSVADRGVDTRGELPPPAAPPATPPASHLGQRAVDAAMSAL
HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
GTPYLWGGTTLAGFDCSGFTQWAWRQAGIELPRLAEHQNVGTPVARENLQPGDLLVWDGH
CCCEEECCCEEECCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHCCCCCCCEEEECCE
VAMYAGNGNIIEAGNPVALNPIRTTNMGMPFKGYFRPTG
EEEEECCCCEEECCCCEEECCEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA