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The map label for this gene is nudL [H]

Identifier: 38232927

GI number: 38232927

Start: 273265

End: 274002

Strand: Direct

Name: nudL [H]

Synonym: DIP0306

Alternate gene names: 38232927

Gene position: 273265-274002 (Clockwise)

Preceding gene: 38232926

Following gene: 38232928

Centisome position: 10.98

GC content: 57.72

Gene sequence:

>738_bases
GTGGATTTTCCGCAACCAGATGCCCCAGGGCACAACATCGACCTGCGGCCAGAATTCGCCCCGCGGTGGCTCTCGCCCCT
AGTAAGCGATGTGGCCAACGGCGTTATCTGCGATCGACTACGCCGTGTTCTCGCCCCACCGCAACGCACGGAAACTACCA
AACAAGCAGCCGTGCTCATGCTGCTCGCAGGAGATCCCCTCGCACACACCGTGCCTAACGACGCCACCGTGCTTCTCACA
CACCGTTCACCAACGATGCGATCGCACTCCGGCCAAATTGCCTTTCCCGGTGGCCGGATGGACCCCACCGACCATAATGT
GGTCGATTGCGCACTGCGGGAAGCGTGGGAAGAAACCGGTGTGGACCGCATGAACGTGACACCCCTTGTTACCTTTCCCA
TGTTGCATATCCGTGCTACCGGATACCCCGTGCATCCCGTACTGGGCTATTGGCACAGGCCGAGTCGCGTTGGGGTGGTA
AGCCCCAACGAAGCTGACGCTGTTGCCGCAATCCCCATTGCGGAATTAGCTGATCCCAGCAACCGGCTTACCGTGGAATT
TGACCGTTGGTCTGGTCCCGCGTTTCGGATCAACGACTTTATTATTTGGGGTTTTACCGGTGGACTCTTAGATGCAATGC
TTTATCAAGCGGGATGGGAACAGCCGTGGGATTCGCACAAGCACTACGATCTATACGACACCCTTGCTCGTTCCCGGAAC
AACGAGCGTTTGACGTAA

Upstream 100 bases:

>100_bases
TGAACGCGGATGGCAGCAAAGAAGCAGTGATGCCGCGCGCGTTTAGCACCTATGAAGAACTAGAAACCGCAGTGATGGCC
AAGGTGCACAAAGGATGACC

Downstream 100 bases:

>100_bases
TGCAGGAAGGCACGACACGACAGTGACACCCGGAATGACAGTCGACGCTGCCATCGTGATCGCGTTAGTGATCGCAATTT
TTACCGGCTGGCGGCAAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MDFPQPDAPGHNIDLRPEFAPRWLSPLVSDVANGVICDRLRRVLAPPQRTETTKQAAVLMLLAGDPLAHTVPNDATVLLT
HRSPTMRSHSGQIAFPGGRMDPTDHNVVDCALREAWEETGVDRMNVTPLVTFPMLHIRATGYPVHPVLGYWHRPSRVGVV
SPNEADAVAAIPIAELADPSNRLTVEFDRWSGPAFRINDFIIWGFTGGLLDAMLYQAGWEQPWDSHKHYDLYDTLARSRN
NERLT

Sequences:

>Translated_245_residues
MDFPQPDAPGHNIDLRPEFAPRWLSPLVSDVANGVICDRLRRVLAPPQRTETTKQAAVLMLLAGDPLAHTVPNDATVLLT
HRSPTMRSHSGQIAFPGGRMDPTDHNVVDCALREAWEETGVDRMNVTPLVTFPMLHIRATGYPVHPVLGYWHRPSRVGVV
SPNEADAVAAIPIAELADPSNRLTVEFDRWSGPAFRINDFIIWGFTGGLLDAMLYQAGWEQPWDSHKHYDLYDTLARSRN
NERLT
>Mature_245_residues
MDFPQPDAPGHNIDLRPEFAPRWLSPLVSDVANGVICDRLRRVLAPPQRTETTKQAAVLMLLAGDPLAHTVPNDATVLLT
HRSPTMRSHSGQIAFPGGRMDPTDHNVVDCALREAWEETGVDRMNVTPLVTFPMLHIRATGYPVHPVLGYWHRPSRVGVV
SPNEADAVAAIPIAELADPSNRLTVEFDRWSGPAFRINDFIIWGFTGGLLDAMLYQAGWEQPWDSHKHYDLYDTLARSRN
NERLT

Specific function: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives [H]

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17536993, Length=178, Percent_Identity=33.1460674157303, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17510677, Length=158, Percent_Identity=33.5443037974684, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI18859683, Length=176, Percent_Identity=34.0909090909091, Blast_Score=82, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR000059 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: NA

Molecular weight: Translated: 27383; Mature: 27383

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS01293 UPF0035

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFPQPDAPGHNIDLRPEFAPRWLSPLVSDVANGVICDRLRRVLAPPQRTETTKQAAVLM
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHEEEE
LLAGDPLAHTVPNDATVLLTHRSPTMRSHSGQIAFPGGRMDPTDHNVVDCALREAWEETG
EEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCC
VDRMNVTPLVTFPMLHIRATGYPVHPVLGYWHRPSRVGVVSPNEADAVAAIPIAELADPS
CCCCCCCEEEEECEEEEEECCCCCCHHHHCCCCCCEEEEECCCCCCCEEECCHHHHCCCC
NRLTVEFDRWSGPAFRINDFIIWGFTGGLLDAMLYQAGWEQPWDSHKHYDLYDTLARSRN
CCEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC
NERLT
CCCCC
>Mature Secondary Structure
MDFPQPDAPGHNIDLRPEFAPRWLSPLVSDVANGVICDRLRRVLAPPQRTETTKQAAVLM
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHEEEE
LLAGDPLAHTVPNDATVLLTHRSPTMRSHSGQIAFPGGRMDPTDHNVVDCALREAWEETG
EEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCC
VDRMNVTPLVTFPMLHIRATGYPVHPVLGYWHRPSRVGVVSPNEADAVAAIPIAELADPS
CCCCCCCEEEEECEEEEEECCCCCCHHHHCCCCCCEEEEECCCCCCCEEECCHHHHCCCC
NRLTVEFDRWSGPAFRINDFIIWGFTGGLLDAMLYQAGWEQPWDSHKHYDLYDTLARSRN
CCEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCC
NERLT
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]