Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 38232664

GI number: 38232664

Start: 22376

End: 23407

Strand: Direct

Name: rbsC [H]

Synonym: DIP0022

Alternate gene names: 38232664

Gene position: 22376-23407 (Clockwise)

Preceding gene: 38232663

Following gene: 38232665

Centisome position: 0.9

GC content: 50.19

Gene sequence:

>1032_bases
ATGAGTTCTGTTTCTGCTGATGATCGACTTCGTCGTCGTACTGGTTTTTCTGCGCTGATTCGTCGCCCTGAGTTGGCGAG
TTTGCTGGGCGCTATTGCTATTTTCGTGTTGTTTATGGTGTTGGCACCGTCGTTTCGTTCGTTGGAATCGTTTTCCACGG
TGTTGTACGCGAGTTCCACTATCGGCATTGTTGCGGTAGCGGTGGGCATGCTGATGATCGGCGCGGAGTTTGATTTGTCT
TCTGGTGTGGCGGTGACGAGTACTGCGTTGGCGGCCACGATGCTGAACTACAATTTACACCTGAATAGTTGGGTGGGTGC
CGGTATTTCGTTGGTGTTTGCGCTGGGTATTGGTGCGTGGAATGGTTTTTTGGTCACGCGTACTGGCATTGATAGTTTCT
TGATTACTCTGGCAGGTTTTTTGGGTTTGCAGGGTTTGAATTTGGCGATCACTAAGTGGGTGACGGGCCAGGTTGCTACT
CCGATTATTTCTGACATGGAAGGTTTTGGTTCTGCGCGCGTGGTGTTTGCTGGCACGATTCATGTGGGTTCGGTGTCGAT
CCGTGCCACGGTGTTGTGGTGGATTTTCTTCGTCGTGATCGGTTCGTGGTTGTTGTTTAAAACTCGGTTTGGCAACTGGA
TTTTTGCGGTGGGTGGCGATGCCGATGCTGCTCGTGCTTCGGGTGTTCCGGTTGATCGCGTAAAAATTATTCTGTTTATG
TTTGTTGGTTTTGCGGCGTGGTTTGTGGGCATGCACAATCTTTTCGCTTTTGATTCGATTCAGGCTGGCCAGGGAGTGGG
TAATGAGTTTTTGTATATCATTGCTGCGGTTATTGGTGGCTGTGCGATGACGGGTGGCCGCGGAACGATCATTGGTACGG
CGATTGGTGCTGTGATTTTCGGTATGACTAATCAGGGCATTGTGTACGCGGGGTGGAATCCGGATTGGTTTAAGTTCTTC
CTTGGTGCCATGTTGTTGTTTGCGGTGTTGACTAATACGTCGTTTGCTAGTTTGACCAAGGGGAGGCGCTAA

Upstream 100 bases:

>100_bases
GTTCGACGATGGGTGGTGGTCGTCCGGTGTATACGGGTCCAAGTTTTGTGGATAGTTCCAATGTGGATGCGATTTCTGAG
GCTGCGAAGGCGGGTCTGCG

Downstream 100 bases:

>100_bases
ATGTCTGAGATTATTGCGTTGCGGGATGTGACCAAATCCTATGGCAGTTTTGATGCGCTGCGCGGGGTGTCGCTTTCCAT
TTCCGCAGGTGAGGTCCTGT

Product: ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MSSVSADDRLRRRTGFSALIRRPELASLLGAIAIFVLFMVLAPSFRSLESFSTVLYASSTIGIVAVAVGMLMIGAEFDLS
SGVAVTSTALAATMLNYNLHLNSWVGAGISLVFALGIGAWNGFLVTRTGIDSFLITLAGFLGLQGLNLAITKWVTGQVAT
PIISDMEGFGSARVVFAGTIHVGSVSIRATVLWWIFFVVIGSWLLFKTRFGNWIFAVGGDADAARASGVPVDRVKIILFM
FVGFAAWFVGMHNLFAFDSIQAGQGVGNEFLYIIAAVIGGCAMTGGRGTIIGTAIGAVIFGMTNQGIVYAGWNPDWFKFF
LGAMLLFAVLTNTSFASLTKGRR

Sequences:

>Translated_343_residues
MSSVSADDRLRRRTGFSALIRRPELASLLGAIAIFVLFMVLAPSFRSLESFSTVLYASSTIGIVAVAVGMLMIGAEFDLS
SGVAVTSTALAATMLNYNLHLNSWVGAGISLVFALGIGAWNGFLVTRTGIDSFLITLAGFLGLQGLNLAITKWVTGQVAT
PIISDMEGFGSARVVFAGTIHVGSVSIRATVLWWIFFVVIGSWLLFKTRFGNWIFAVGGDADAARASGVPVDRVKIILFM
FVGFAAWFVGMHNLFAFDSIQAGQGVGNEFLYIIAAVIGGCAMTGGRGTIIGTAIGAVIFGMTNQGIVYAGWNPDWFKFF
LGAMLLFAVLTNTSFASLTKGRR
>Mature_342_residues
SSVSADDRLRRRTGFSALIRRPELASLLGAIAIFVLFMVLAPSFRSLESFSTVLYASSTIGIVAVAVGMLMIGAEFDLSS
GVAVTSTALAATMLNYNLHLNSWVGAGISLVFALGIGAWNGFLVTRTGIDSFLITLAGFLGLQGLNLAITKWVTGQVATP
IISDMEGFGSARVVFAGTIHVGSVSIRATVLWWIFFVVIGSWLLFKTRFGNWIFAVGGDADAARASGVPVDRVKIILFMF
VGFAAWFVGMHNLFAFDSIQAGQGVGNEFLYIIAAVIGGCAMTGGRGTIIGTAIGAVIFGMTNQGIVYAGWNPDWFKFFL
GAMLLFAVLTNTSFASLTKGRR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=313, Percent_Identity=29.073482428115, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1788896, Length=310, Percent_Identity=33.2258064516129, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082395, Length=288, Percent_Identity=29.1666666666667, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI145693152, Length=297, Percent_Identity=27.9461279461279, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789992, Length=351, Percent_Identity=26.7806267806268, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788471, Length=346, Percent_Identity=32.3699421965318, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693214, Length=297, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36437; Mature: 36306

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVSADDRLRRRTGFSALIRRPELASLLGAIAIFVLFMVLAPSFRSLESFSTVLYASST
CCCCCHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCH
IGIVAVAVGMLMIGAEFDLSSGVAVTSTALAATMLNYNLHLNSWVGAGISLVFALGIGAW
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHCCC
NGFLVTRTGIDSFLITLAGFLGLQGLNLAITKWVTGQVATPIISDMEGFGSARVVFAGTI
CCEEEEECCHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHHHHHHHCCCCEEEEEEEEE
HVGSVSIRATVLWWIFFVVIGSWLLFKTRFGNWIFAVGGDADAARASGVPVDRVKIILFM
EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCCCCHHHHHHHHHH
FVGFAAWFVGMHNLFAFDSIQAGQGVGNEFLYIIAAVIGGCAMTGGRGTIIGTAIGAVIF
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHH
GMTNQGIVYAGWNPDWFKFFLGAMLLFAVLTNTSFASLTKGRR
CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
>Mature Secondary Structure 
SSVSADDRLRRRTGFSALIRRPELASLLGAIAIFVLFMVLAPSFRSLESFSTVLYASST
CCCCHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCH
IGIVAVAVGMLMIGAEFDLSSGVAVTSTALAATMLNYNLHLNSWVGAGISLVFALGIGAW
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHCCC
NGFLVTRTGIDSFLITLAGFLGLQGLNLAITKWVTGQVATPIISDMEGFGSARVVFAGTI
CCEEEEECCHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHHHHHHHCCCCEEEEEEEEE
HVGSVSIRATVLWWIFFVVIGSWLLFKTRFGNWIFAVGGDADAARASGVPVDRVKIILFM
EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCCCCHHHHHHHHHH
FVGFAAWFVGMHNLFAFDSIQAGQGVGNEFLYIIAAVIGGCAMTGGRGTIIGTAIGAVIF
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHH
GMTNQGIVYAGWNPDWFKFFLGAMLLFAVLTNTSFASLTKGRR
CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]