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The map label for this gene is rraA [H]

Identifier: 37681202

GI number: 37681202

Start: 3099948

End: 3100469

Strand: Direct

Name: rraA [H]

Synonym: VV3018

Alternate gene names: 37681202

Gene position: 3099948-3100469 (Clockwise)

Preceding gene: 37681201

Following gene: 37681203

Centisome position: 92.41

GC content: 49.43

Gene sequence:

>522_bases
ATGGAATACAACACTTCAGCCCTTTGCGATATCTATATGGACCAAGTGGATGTAGTCGAGCCTATGTTCAGTAACTTTGG
TGGCCGCGCTTCCTTTGCCGGACAAATCACCACAGTCAAGTGTTTTGAGGACAATGCCCTCATTCGAGAAACGCTGGAAC
AAGATGGTGTTGGCCGTGTACTTTTGGTTGATGGTGGTGGTTCATTACGTCGAGCATTACTTGACGGCGAACTTGCCGCG
ATAGCGGAAGAGAACGAATGGGAAGGCATCGTTGTCTACGGCTGTGTGCGTGAAGTGGACGAGCTGGAAGATATGAATAT
CGGCATTCAAGCTTTAGCCTCTATTCCAGTGAGTGCTGCCATGCAGGGTGTTGGCGAAGTGGATGTTCCCGTCAATTTTG
GTGGGGTGACCTTCCTTCCAGAAGACTACCTCTATGCAGATACAACGGGCATCATTCTCTCCCAAGAGCCTCTCAGTGCC
GATCTTGAAGAAGATGAAGAAGAGCCAGAGCTGCTCGATTAA

Upstream 100 bases:

>100_bases
GGTAGCTCAAACTCTTGTTAGTTAATCATTAATTGTCATTGCAATGACTTAATGCACGGATATACTCAAAAGAAATCTCG
TTGACCAAAGAAGGTATGCC

Downstream 100 bases:

>100_bases
AGAGAAAAAAGCGTCACTTTGACGCTTTTTTCTATTGAGCAAGCAGTCAAAATAGAGCAAAAGTCAGCGCGGCGTAAAGA
TGCGCTGTTTTTTTGACCGA

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MEYNTSALCDIYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRVLLVDGGGSLRRALLDGELAA
IAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVSAAMQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLSA
DLEEDEEEPELLD

Sequences:

>Translated_173_residues
MEYNTSALCDIYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRVLLVDGGGSLRRALLDGELAA
IAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVSAAMQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLSA
DLEEDEEEPELLD
>Mature_173_residues
MEYNTSALCDIYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRVLLVDGGGSLRRALLDGELAA
IAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVSAAMQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLSA
DLEEDEEEPELLD

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. Modulates RNA-binding and helicase activities

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=158, Percent_Identity=69.620253164557, Blast_Score=233, Evalue=5e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR014339
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 18760; Mature: 18760

Theoretical pI: Translated: 3.42; Mature: 3.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYNTSALCDIYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCEE
LLVDGGGSLRRALLDGELAAIAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVSAA
EEEECCCHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHCCCCCHHHHHCCCHHHH
MQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLSADLEEDEEEPELLD
HCCCCCCCCEEECCCEEECCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEYNTSALCDIYMDQVDVVEPMFSNFGGRASFAGQITTVKCFEDNALIRETLEQDGVGRV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCEE
LLVDGGGSLRRALLDGELAAIAEENEWEGIVVYGCVREVDELEDMNIGIQALASIPVSAA
EEEECCCHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHCCCCCHHHHHCCCHHHH
MQGVGEVDVPVNFGGVTFLPEDYLYADTTGIILSQEPLSADLEEDEEEPELLD
HCCCCCCCCEEECCCEEECCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA