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The map label for this gene is ygfZ [C]

Identifier: 37681026

GI number: 37681026

Start: 2900282

End: 2901313

Strand: Direct

Name: ygfZ [C]

Synonym: VV2842

Alternate gene names: 37681026

Gene position: 2900282-2901313 (Clockwise)

Preceding gene: 37681023

Following gene: 37681027

Centisome position: 86.46

GC content: 49.9

Gene sequence:

>1032_bases
ATGGTCACTTGCAGATTAACATACCTCAATAAATCGACTTTATGGATAGCAAATAACATGCAATCGACTCAACCAATCCA
ACGATGCGCGCTTGGCAGCCAACAAGCGTTACCAGAGCTCGCCGTCAGCTTATTAGATAATCTTGGTCTAATTACCATGA
CAGGTAACGATAAAAAATCTTACCTTCAAGGTCAGGTGACTTGCGACGTCGTTTCTTTAGAAGCGGATCAAGTGACTTGG
GGCGGCCACTGCGATGCAAAAGGCAAGCTGTGGAGTGCCTTTCGTCTGTTTCATTACGGCGACGGCTACGCAATGTTGCA
AGATAAGTCAGCCATTGACGTGGAGTTGCGTGAACTCAAAAAATACGCCGTCTTTGCCAAGGTTGAAATCAATGTTAGCG
ATGCCATCTTGCTGGGCGTTTGCGGTGTACAGGCGGAACAAGCCATCGCGAAACTGACCAACAATGCAGAGGCGGCAGTG
GCAACCTTTGCCCAAGGGACAGCGGTAAAGATCTCACCACAGCGCTGGTTATTGGTCGTAGATGCAAACCAACAAGATGA
AGTGCTTGCCATGTTGGCGACAGCACCGTTGTGTGACCACGCTCTTTGGGATCTTTACGATATCCTAGAAGTCTCTCCAC
GCATCCCTGCTTTTGCCCAAAATGAGCACATTCCTCAAGCCGTAAATTTGCAGGCGGTGAATGGCATTAGCTTTAAAAAG
GGCTGCTACACAGGCCAAGAGACCGTTGCACGAGCCAAATATCGTGGTATCAACAAGCGAGCTCTGTATCGACTCTCTGG
CGCCATAGAACCATCAGCACCAGAGACAACGATCAGCTTGGAACGCAGTGTGGGTGATAACTGGCGCGCGGCTGGTGAAG
CGTTGGTGAGTTATCACTTTGATGATGGGCGCGCGACCGGACTCTTTGTGCTACCAAATGATCTGGAGCCCGAGACGCAA
TTTCGCCTAGCAGGTCAAAGTGAGCAATTGTGGCAACGAGAGCCCCTACCGTATTCCCTCGATGACGAATAG

Upstream 100 bases:

>100_bases
GTGTAACAAGGCTACTGATTTGCCACTAGTAGATATGTCACAAACTGAGTAGCAATCGCATCTCAACAAAGGGAAGTCCC
TACATTTCCTCTGCTGACAA

Downstream 100 bases:

>100_bases
TGATTTGTCCACAGCATTGACCCGCTACCTTGATGAGCAACAGATACCTTATCATCTGTTGCCTCATCAAACGCCAGCCA
CCACCATCGAAGACGCAGCC

Product: aminomethyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MVTCRLTYLNKSTLWIANNMQSTQPIQRCALGSQQALPELAVSLLDNLGLITMTGNDKKSYLQGQVTCDVVSLEADQVTW
GGHCDAKGKLWSAFRLFHYGDGYAMLQDKSAIDVELRELKKYAVFAKVEINVSDAILLGVCGVQAEQAIAKLTNNAEAAV
ATFAQGTAVKISPQRWLLVVDANQQDEVLAMLATAPLCDHALWDLYDILEVSPRIPAFAQNEHIPQAVNLQAVNGISFKK
GCYTGQETVARAKYRGINKRALYRLSGAIEPSAPETTISLERSVGDNWRAAGEALVSYHFDDGRATGLFVLPNDLEPETQ
FRLAGQSEQLWQREPLPYSLDDE

Sequences:

>Translated_343_residues
MVTCRLTYLNKSTLWIANNMQSTQPIQRCALGSQQALPELAVSLLDNLGLITMTGNDKKSYLQGQVTCDVVSLEADQVTW
GGHCDAKGKLWSAFRLFHYGDGYAMLQDKSAIDVELRELKKYAVFAKVEINVSDAILLGVCGVQAEQAIAKLTNNAEAAV
ATFAQGTAVKISPQRWLLVVDANQQDEVLAMLATAPLCDHALWDLYDILEVSPRIPAFAQNEHIPQAVNLQAVNGISFKK
GCYTGQETVARAKYRGINKRALYRLSGAIEPSAPETTISLERSVGDNWRAAGEALVSYHFDDGRATGLFVLPNDLEPETQ
FRLAGQSEQLWQREPLPYSLDDE
>Mature_343_residues
MVTCRLTYLNKSTLWIANNMQSTQPIQRCALGSQQALPELAVSLLDNLGLITMTGNDKKSYLQGQVTCDVVSLEADQVTW
GGHCDAKGKLWSAFRLFHYGDGYAMLQDKSAIDVELRELKKYAVFAKVEINVSDAILLGVCGVQAEQAIAKLTNNAEAAV
ATFAQGTAVKISPQRWLLVVDANQQDEVLAMLATAPLCDHALWDLYDILEVSPRIPAFAQNEHIPQAVNLQAVNGISFKK
GCYTGQETVARAKYRGINKRALYRLSGAIEPSAPETTISLERSVGDNWRAAGEALVSYHFDDGRATGLFVLPNDLEPETQ
FRLAGQSEQLWQREPLPYSLDDE

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family [H]

Homologues:

Organism=Escherichia coli, GI1789265, Length=310, Percent_Identity=42.9032258064516, Blast_Score=226, Evalue=2e-60,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 37751; Mature: 37751

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTCRLTYLNKSTLWIANNMQSTQPIQRCALGSQQALPELAVSLLDNLGLITMTGNDKKS
CEEEEEEEECCCEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCHH
YLQGQVTCDVVSLEADQVTWGGHCDAKGKLWSAFRLFHYGDGYAMLQDKSAIDVELRELK
HCCCEEEEEEEEEECCEEEECCCCCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHH
KYAVFAKVEINVSDAILLGVCGVQAEQAIAKLTNNAEAAVATFAQGTAVKISPQRWLLVV
HEEEEEEEEECCCCEEEEEECCCCHHHHHHHHCCCCHHHEEECCCCCEEEECCCEEEEEE
DANQQDEVLAMLATAPLCDHALWDLYDILEVSPRIPAFAQNEHIPQAVNLQAVNGISFKK
ECCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECEEEECCCCCCC
GCYTGQETVARAKYRGINKRALYRLSGAIEPSAPETTISLERSVGDNWRAAGEALVSYHF
CCCCCHHHHHHHHHCCCCHHHEEEECCCCCCCCCCEEEEEECCCCCCHHHHCCEEEEEEE
DDGRATGLFVLPNDLEPETQFRLAGQSEQLWQREPLPYSLDDE
CCCCEEEEEEECCCCCCCCEEEECCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVTCRLTYLNKSTLWIANNMQSTQPIQRCALGSQQALPELAVSLLDNLGLITMTGNDKKS
CEEEEEEEECCCEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCHH
YLQGQVTCDVVSLEADQVTWGGHCDAKGKLWSAFRLFHYGDGYAMLQDKSAIDVELRELK
HCCCEEEEEEEEEECCEEEECCCCCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHH
KYAVFAKVEINVSDAILLGVCGVQAEQAIAKLTNNAEAAVATFAQGTAVKISPQRWLLVV
HEEEEEEEEECCCCEEEEEECCCCHHHHHHHHCCCCHHHEEECCCCCEEEECCCEEEEEE
DANQQDEVLAMLATAPLCDHALWDLYDILEVSPRIPAFAQNEHIPQAVNLQAVNGISFKK
ECCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECEEEECCCCCCC
GCYTGQETVARAKYRGINKRALYRLSGAIEPSAPETTISLERSVGDNWRAAGEALVSYHF
CCCCCHHHHHHHHHCCCCHHHEEEECCCCCCCCCCEEEEEECCCCCCHHHHCCEEEEEEE
DDGRATGLFVLPNDLEPETQFRLAGQSEQLWQREPLPYSLDDE
CCCCEEEEEEECCCCCCCCEEEECCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA