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The map label for this gene is 37679955

Identifier: 37679955

GI number: 37679955

Start: 1817712

End: 1818857

Strand: Direct

Name: 37679955

Synonym: VV1771

Alternate gene names: NA

Gene position: 1817712-1818857 (Clockwise)

Preceding gene: 37679954

Following gene: 37679963

Centisome position: 54.19

GC content: 32.29

Gene sequence:

>1146_bases
TTGTGTCGGGGAAGAAGCCGAGATATTATGAAATATAAAAAACTAACCACCAAAGCATTCATATCTATTCTTTCGGATGA
AACTAGTGACCAACTAGAGTTACTGAAGAAACCTATAGAACCTCACGGAATTAGTGATGTAAAACAAGGCAAGCTTGGCA
CTAAATCTATATTTAAGTTAACTCCGGCCAAATCACAGTATCTTGGTAGACTCAATAATAAATTTTTCTGCCATATCCAA
GTCAATAACTCTGCTGTAGCCTATGTGGAGAAAAAGTCATACCTTGACATGTTTGAGCCTCATAGAAAAAATACCAATTT
CTTAAGAATAGACATTAAGTCTTTTTTTCATAGCATCAACAGAGAAATACTCGCAGAAGCCTTGTCGCCCTACGTTACTA
ATGAAATCTTCTTTGAGTCAGGAAAGGTAAAGCAGAGTTTACTTGATGCGTTATTAAATCTCGTAAGCCTAAGAGTATCA
ACAGAATACAATGATCAATCATTGCATAACAAAGACATACTTCCTATAGGGTTTAAGTCCTCTCCAGTCATATCAAATAT
TGTTTTTCGCAGGTTTGATATCATAATCCAAGAGCTCTGCGCTAGAAGTGATATTATATATACGCGCTATGCTGATGACA
TGCTTTTTTCATCACCTGAACACTCTAAATACTTGCATACAAATAAGTTTTTAAGCGAAATATCTTACACACTATCTTTG
TCCGGATTCAAGCTCAATCAAGCGAAAACCATAAAAGACAAAAATATGATTTCTGTTAATGGCTATGTAATAGAATCTGG
AGAAAATGGTAACTCTGGAAGCATTAGGATTTCAGAAAAGAAAACAAAAAAAATATATAAGCTTATATATATGATGGAAA
ATAACATCCCACCCAGAACCATAATCAACAGAATTTTTAAAATAAGAGATAGAGATATTATATATAGTTATGATAAAGGA
AAAAGAAAATTTAAGGATAAGTTTTACAAAACACAAACCCTTAACAAGCTAACTGGATATCGTGCCTACATAATCTCCTT
ATTAATATACAATGAAAAATATCATTGTATTAAAGAAGAATATATAAACGAATACAAAACCCTTATAGGAAAATTGGAAG
TTCAGATATATAAGCTGGTTAAGTAA

Upstream 100 bases:

>100_bases
TTTAAACAAAGCTTAGCTCCTAACAGTCAGTAGCTGTGCGCAGTTAGCATCATACTTTAATGTTAACTTTAAGGGCACAC
GGCGTGTAAAGATTGTTCTT

Downstream 100 bases:

>100_bases
ACCACAATCTAAAATCTCTTTAAGGTGACATTTCATTTCGTTGGGAAAATGTCACCAAATTTTGCAATGCCCACTCAATG
CAAGATATAGGTACAATAAC

Product: retron-type reverse transcriptase

Products: NA

Alternate protein names: RNA-Directed DNA Polymerase

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MCRGRSRDIMKYKKLTTKAFISILSDETSDQLELLKKPIEPHGISDVKQGKLGTKSIFKLTPAKSQYLGRLNNKFFCHIQ
VNNSAVAYVEKKSYLDMFEPHRKNTNFLRIDIKSFFHSINREILAEALSPYVTNEIFFESGKVKQSLLDALLNLVSLRVS
TEYNDQSLHNKDILPIGFKSSPVISNIVFRRFDIIIQELCARSDIIYTRYADDMLFSSPEHSKYLHTNKFLSEISYTLSL
SGFKLNQAKTIKDKNMISVNGYVIESGENGNSGSIRISEKKTKKIYKLIYMMENNIPPRTIINRIFKIRDRDIIYSYDKG
KRKFKDKFYKTQTLNKLTGYRAYIISLLIYNEKYHCIKEEYINEYKTLIGKLEVQIYKLVK

Sequences:

>Translated_381_residues
MCRGRSRDIMKYKKLTTKAFISILSDETSDQLELLKKPIEPHGISDVKQGKLGTKSIFKLTPAKSQYLGRLNNKFFCHIQ
VNNSAVAYVEKKSYLDMFEPHRKNTNFLRIDIKSFFHSINREILAEALSPYVTNEIFFESGKVKQSLLDALLNLVSLRVS
TEYNDQSLHNKDILPIGFKSSPVISNIVFRRFDIIIQELCARSDIIYTRYADDMLFSSPEHSKYLHTNKFLSEISYTLSL
SGFKLNQAKTIKDKNMISVNGYVIESGENGNSGSIRISEKKTKKIYKLIYMMENNIPPRTIINRIFKIRDRDIIYSYDKG
KRKFKDKFYKTQTLNKLTGYRAYIISLLIYNEKYHCIKEEYINEYKTLIGKLEVQIYKLVK
>Mature_381_residues
MCRGRSRDIMKYKKLTTKAFISILSDETSDQLELLKKPIEPHGISDVKQGKLGTKSIFKLTPAKSQYLGRLNNKFFCHIQ
VNNSAVAYVEKKSYLDMFEPHRKNTNFLRIDIKSFFHSINREILAEALSPYVTNEIFFESGKVKQSLLDALLNLVSLRVS
TEYNDQSLHNKDILPIGFKSSPVISNIVFRRFDIIIQELCARSDIIYTRYADDMLFSSPEHSKYLHTNKFLSEISYTLSL
SGFKLNQAKTIKDKNMISVNGYVIESGENGNSGSIRISEKKTKKIYKLIYMMENNIPPRTIINRIFKIRDRDIIYSYDKG
KRKFKDKFYKTQTLNKLTGYRAYIISLLIYNEKYHCIKEEYINEYKTLIGKLEVQIYKLVK

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44467; Mature: 44467

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRGRSRDIMKYKKLTTKAFISILSDETSDQLELLKKPIEPHGISDVKQGKLGTKSIFKL
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHCCCCCCCHHEEE
TPAKSQYLGRLNNKFFCHIQVNNSAVAYVEKKSYLDMFEPHRKNTNFLRIDIKSFFHSIN
CCCHHHHHHHCCCEEEEEEEECCCEEEEEECHHHHHHHCCCCCCCCEEEEEHHHHHHHHH
REILAEALSPYVTNEIFFESGKVKQSLLDALLNLVSLRVSTEYNDQSLHNKDILPIGFKS
HHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEECCCC
SPVISNIVFRRFDIIIQELCARSDIIYTRYADDMLFSSPEHSKYLHTNKFLSEISYTLSL
CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHEEEE
SGFKLNQAKTIKDKNMISVNGYVIESGENGNSGSIRISEKKTKKIYKLIYMMENNIPPRT
CCEEECCCCEECCCCEEEECCEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCHHH
IINRIFKIRDRDIIYSYDKGKRKFKDKFYKTQTLNKLTGYRAYIISLLIYNEKYHCIKEE
HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
YINEYKTLIGKLEVQIYKLVK
HHHHHHHHHHHHHHHHEECCC
>Mature Secondary Structure
MCRGRSRDIMKYKKLTTKAFISILSDETSDQLELLKKPIEPHGISDVKQGKLGTKSIFKL
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHCCCCCCCHHEEE
TPAKSQYLGRLNNKFFCHIQVNNSAVAYVEKKSYLDMFEPHRKNTNFLRIDIKSFFHSIN
CCCHHHHHHHCCCEEEEEEEECCCEEEEEECHHHHHHHCCCCCCCCEEEEEHHHHHHHHH
REILAEALSPYVTNEIFFESGKVKQSLLDALLNLVSLRVSTEYNDQSLHNKDILPIGFKS
HHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEECCCC
SPVISNIVFRRFDIIIQELCARSDIIYTRYADDMLFSSPEHSKYLHTNKFLSEISYTLSL
CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHEEEE
SGFKLNQAKTIKDKNMISVNGYVIESGENGNSGSIRISEKKTKKIYKLIYMMENNIPPRT
CCEEECCCCEECCCCEEEECCEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCHHH
IINRIFKIRDRDIIYSYDKGKRKFKDKFYKTQTLNKLTGYRAYIISLLIYNEKYHCIKEE
HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
YINEYKTLIGKLEVQIYKLVK
HHHHHHHHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA