| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is 37679877
Identifier: 37679877
GI number: 37679877
Start: 1746170
End: 1746775
Strand: Direct
Name: 37679877
Synonym: VV1693
Alternate gene names: NA
Gene position: 1746170-1746775 (Clockwise)
Preceding gene: 37679874
Following gene: 37679879
Centisome position: 52.05
GC content: 42.41
Gene sequence:
>606_bases ATGACACGTACTTTAATTACAATGCTAGTTGTAGCCAGCATTGCTGGTTGTAACTCATCCGGCGATAGCCGCTCTACATC CCCTTCCCCAGCTACGGCAACGCCATCCATTCAAATTGAAAAAACAGATGAGCTTATTGCAACACTAAAGAGCCAGAAAA CCATTAACGACCAGCTAATGGTGATTTATGAGCGCTATGAGCCTTTGTTAGATCGCTCTGATTCGTTGACAGGACCAGAT ACTAACCAAGATGGTATTCGAGATGACGTCGAAGCGTTTATTGATGCGTTAGAAGTAACAGAGCCTGTTCGTAATGCTTT AAAGCAGGATGCGAGATTTACACAAGAAAACTTATACTATGACTTTAGCGCTCCAAGTGACGAAGCTACTGACCGAGCGC TTAGAATTGCCAAAAAAAATTATAAAGTGTTAGCGTGTAAGGACTATGTAGGAATCCCGGTTAGAGATATAACGAATACA TCTAGAACAATTACTGCGCTAACTTACAACACAAAAGCTCGAACTTTAGCCTATCTGTCATACAATCGACTGCTCAATGG CTCTGGGGGAACACTGCTGAATCCAGAGGCCAAATATTGTGAGTGA
Upstream 100 bases:
>100_bases CACGATAACACCTACTAATAACGGTATAGAAAATCATAATTATCATTATTAAAATCATCTACTTACACTACATGCTTCTT AGTTTACTTGAGGCATAACA
Downstream 100 bases:
>100_bases GAAGTTGGCACCAACTGTGCCTTCAATTAGTTAATAACGAATTCTAATTCCCTTATAGAAAATCATAATTATTATTATCA AAATCATCTGCTTACACTAC
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MTRTLITMLVVASIAGCNSSGDSRSTSPSPATATPSIQIEKTDELIATLKSQKTINDQLMVIYERYEPLLDRSDSLTGPD TNQDGIRDDVEAFIDALEVTEPVRNALKQDARFTQENLYYDFSAPSDEATDRALRIAKKNYKVLACKDYVGIPVRDITNT SRTITALTYNTKARTLAYLSYNRLLNGSGGTLLNPEAKYCE
Sequences:
>Translated_201_residues MTRTLITMLVVASIAGCNSSGDSRSTSPSPATATPSIQIEKTDELIATLKSQKTINDQLMVIYERYEPLLDRSDSLTGPD TNQDGIRDDVEAFIDALEVTEPVRNALKQDARFTQENLYYDFSAPSDEATDRALRIAKKNYKVLACKDYVGIPVRDITNT SRTITALTYNTKARTLAYLSYNRLLNGSGGTLLNPEAKYCE >Mature_200_residues TRTLITMLVVASIAGCNSSGDSRSTSPSPATATPSIQIEKTDELIATLKSQKTINDQLMVIYERYEPLLDRSDSLTGPDT NQDGIRDDVEAFIDALEVTEPVRNALKQDARFTQENLYYDFSAPSDEATDRALRIAKKNYKVLACKDYVGIPVRDITNTS RTITALTYNTKARTLAYLSYNRLLNGSGGTLLNPEAKYCE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22246; Mature: 22115
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTLITMLVVASIAGCNSSGDSRSTSPSPATATPSIQIEKTDELIATLKSQKTINDQLM CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCHHE VIYERYEPLLDRSDSLTGPDTNQDGIRDDVEAFIDALEVTEPVRNALKQDARFTQENLYY EHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE DFSAPSDEATDRALRIAKKNYKVLACKDYVGIPVRDITNTSRTITALTYNTKARTLAYLS ECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCCEEEEEEECCCHHEEEEEE YNRLLNGSGGTLLNPEAKYCE HHHEECCCCCCEECCCCCCCC >Mature Secondary Structure TRTLITMLVVASIAGCNSSGDSRSTSPSPATATPSIQIEKTDELIATLKSQKTINDQLM CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCHHE VIYERYEPLLDRSDSLTGPDTNQDGIRDDVEAFIDALEVTEPVRNALKQDARFTQENLYY EHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE DFSAPSDEATDRALRIAKKNYKVLACKDYVGIPVRDITNTSRTITALTYNTKARTLAYLS ECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCCEEEEEEECCCHHEEEEEE YNRLLNGSGGTLLNPEAKYCE HHHEECCCCCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA