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The map label for this gene is ygcF [H]

Identifier: 37679724

GI number: 37679724

Start: 1580998

End: 1581672

Strand: Direct

Name: ygcF [H]

Synonym: VV1540

Alternate gene names: 37679724

Gene position: 1580998-1581672 (Clockwise)

Preceding gene: 37679720

Following gene: 37679725

Centisome position: 47.13

GC content: 48.15

Gene sequence:

>675_bases
GTGACGTTGTACAAAGTTAACGAGATGTTTGAAACCATTCAGGGCGAAGGTGTGTTTACTGGTGTTCCAGCGGTTTTCGT
GCGCTTGCAGATTTGTCCTGTAGGGTGCTCTTGGTGTGATACCAAGCAAACGTGGGAAGCAGCAGAGCAAGATGAACAAA
GCTTTGCTGAGATCATCGTTAAAACAGGGGACAGTCCGACTTGGTGTCAAGCGGATGCCGCAGCTATTGTTGAGCAGTAC
CAACGTCAAGGTTACAGCGCCAAGCACATCGTCATTACTGGTGGTGAACCTTGTTTGTACGATCTCACCGAGCTGACACA
AGCATTTGAAGCCATTGGCTGCCAATGTCAGATAGAGACCAGTGGTACTTACGAAGTCAAAGCAAGCGAAAACACTTGGG
TGACGGTATCGCCTAAAGTCGCGATGAAAGGTAAGTTGCCGATCTTAGACAGTGCATTACAACGAGCCAACGAGATCAAA
CATCCGGTCGGTACCCAGAAAGACATCGACCAGTTAGACGCTTTACTGCTTCGCGCTCAAGTGCCCGCAACAACGGTGAT
CGCACTGCAACCTATTAGTCAAAAAGAGAGAGCCACTCAGTTGTGCATCGACACCTGTATTAAGCGCAATTGGCGTTTGT
CGATTCAAACACATAAGTATCTGAGTATCGCGTAA

Upstream 100 bases:

>100_bases
GTCAAATTAACAATGAATTTTTTCGTTGAGAAGAGATTCATTTGACCTCGGGGCGAGTCTCATTTAAGGTCTGCGCCTTG
CAAAAATTTTTAGGGTTGTA

Downstream 100 bases:

>100_bases
GAGGGATTGTTTATGAACAAAGCCGTTGTGGTTTTTAGTGGTGGTCAGGATTCGACGACCTGTTTAGTCAAAGCACTCAA
TGAATTTGATGAAGTGCATG

Product: organic radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MTLYKVNEMFETIQGEGVFTGVPAVFVRLQICPVGCSWCDTKQTWEAAEQDEQSFAEIIVKTGDSPTWCQADAAAIVEQY
QRQGYSAKHIVITGGEPCLYDLTELTQAFEAIGCQCQIETSGTYEVKASENTWVTVSPKVAMKGKLPILDSALQRANEIK
HPVGTQKDIDQLDALLLRAQVPATTVIALQPISQKERATQLCIDTCIKRNWRLSIQTHKYLSIA

Sequences:

>Translated_224_residues
MTLYKVNEMFETIQGEGVFTGVPAVFVRLQICPVGCSWCDTKQTWEAAEQDEQSFAEIIVKTGDSPTWCQADAAAIVEQY
QRQGYSAKHIVITGGEPCLYDLTELTQAFEAIGCQCQIETSGTYEVKASENTWVTVSPKVAMKGKLPILDSALQRANEIK
HPVGTQKDIDQLDALLLRAQVPATTVIALQPISQKERATQLCIDTCIKRNWRLSIQTHKYLSIA
>Mature_223_residues
TLYKVNEMFETIQGEGVFTGVPAVFVRLQICPVGCSWCDTKQTWEAAEQDEQSFAEIIVKTGDSPTWCQADAAAIVEQYQ
RQGYSAKHIVITGGEPCLYDLTELTQAFEAIGCQCQIETSGTYEVKASENTWVTVSPKVAMKGKLPILDSALQRANEIKH
PVGTQKDIDQLDALLLRAQVPATTVIALQPISQKERATQLCIDTCIKRNWRLSIQTHKYLSIA

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=221, Percent_Identity=60.6334841628959, Blast_Score=286, Evalue=9e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24858; Mature: 24726

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLYKVNEMFETIQGEGVFTGVPAVFVRLQICPVGCSWCDTKQTWEAAEQDEQSFAEIIV
CCEEHHHHHHHHHCCCCEEECHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHE
KTGDSPTWCQADAAAIVEQYQRQGYSAKHIVITGGEPCLYDLTELTQAFEAIGCQCQIET
ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEC
SGTYEVKASENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVGTQKDIDQLDALLLRAQ
CCEEEEEECCCEEEEECCCEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
VPATTVIALQPISQKERATQLCIDTCIKRNWRLSIQTHKYLSIA
CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECEEEEEC
>Mature Secondary Structure 
TLYKVNEMFETIQGEGVFTGVPAVFVRLQICPVGCSWCDTKQTWEAAEQDEQSFAEIIV
CEEHHHHHHHHHCCCCEEECHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHE
KTGDSPTWCQADAAAIVEQYQRQGYSAKHIVITGGEPCLYDLTELTQAFEAIGCQCQIET
ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEC
SGTYEVKASENTWVTVSPKVAMKGKLPILDSALQRANEIKHPVGTQKDIDQLDALLLRAQ
CCEEEEEECCCEEEEECCCEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
VPATTVIALQPISQKERATQLCIDTCIKRNWRLSIQTHKYLSIA
CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]