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The map label for this gene is ydfG [C]

Identifier: 37679518

GI number: 37679518

Start: 1361666

End: 1362391

Strand: Direct

Name: ydfG [C]

Synonym: VV1334

Alternate gene names: 37679518

Gene position: 1361666-1362391 (Clockwise)

Preceding gene: 37679517

Following gene: 37679519

Centisome position: 40.59

GC content: 48.21

Gene sequence:

>726_bases
ATGAACTCAGTGCTCATTACCGGTGCGACATCGGGGATCGGCAAGAAACTAGCGAAAGATTTTGCTGATGAAGGTGCAAA
AGTGATCGCATGTGGACGCAATCGTGAGGTTCTCCAAGAGCTAGAACAGTATTCCTCCGCCATAGCAACGATCAGTTTTG
ATGTCACGGATTACCAGCAAACGCGAGAGGCATTATCGGTGTTGCCCTTTATTCCAAACGTTTGGCTATTTAACGCTGGT
GATTGTGAATACATGGACGATGGCATCGTTGATGCCCAATTGATGCAACGTGTGTTCAGCGTCAATGTTTTTGGTGTGGT
GAACTGTATCGAGGCCAGCCAAACCCATTTTCAACCTGGACACAAGGTGGTGATTGTCGGCTCTATTGCTTCGGAATTCG
CTCTGCCAAGAGCGGAAGCGTATGGCGCATCTAAGGCTGCGATTGGGTATTTTGCGCGTAGCTTGTCGCTCAATCTTCAA
GCCAAGGGCATTGATGTTGTCACTGTCTTTCCTGGTTTTGTTTCCACTCCGCTGACGAACAAAAATACGTTTGCAATGCC
GATGATCATCACGGTTGAACAGGCCTCAAAGGCGATTCGGCAACAACTGGCATCCGGGAAGCAGCACATCTATTTTCCCG
CTCGGTTTACCGCTCTTATTCGGTTACTTGCGTTACTGCCTTACCGTTGGCAGAAGGCGTTAGCTTCAAGATTAATTGCC
CAATAA

Upstream 100 bases:

>100_bases
TGATTTACCACCGCGACTATTTTGACCTTGGCGAAATGCTCTATGAAAACCTGCCGTTACTGGGTGGGATCATTCGGGCC
ATAAAGCAGAGGTTAGGGCA

Downstream 100 bases:

>100_bases
ATTCAAAGGATAATGTATGAAAATTGCAATAATAGGTACAGGCATCTCCGGATTAACATGTGGCTACCATCTGTACAAAG
CGCATGACATTACACTGTTT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MNSVLITGATSGIGKKLAKDFADEGAKVIACGRNREVLQELEQYSSAIATISFDVTDYQQTREALSVLPFIPNVWLFNAG
DCEYMDDGIVDAQLMQRVFSVNVFGVVNCIEASQTHFQPGHKVVIVGSIASEFALPRAEAYGASKAAIGYFARSLSLNLQ
AKGIDVVTVFPGFVSTPLTNKNTFAMPMIITVEQASKAIRQQLASGKQHIYFPARFTALIRLLALLPYRWQKALASRLIA
Q

Sequences:

>Translated_241_residues
MNSVLITGATSGIGKKLAKDFADEGAKVIACGRNREVLQELEQYSSAIATISFDVTDYQQTREALSVLPFIPNVWLFNAG
DCEYMDDGIVDAQLMQRVFSVNVFGVVNCIEASQTHFQPGHKVVIVGSIASEFALPRAEAYGASKAAIGYFARSLSLNLQ
AKGIDVVTVFPGFVSTPLTNKNTFAMPMIITVEQASKAIRQQLASGKQHIYFPARFTALIRLLALLPYRWQKALASRLIA
Q
>Mature_241_residues
MNSVLITGATSGIGKKLAKDFADEGAKVIACGRNREVLQELEQYSSAIATISFDVTDYQQTREALSVLPFIPNVWLFNAG
DCEYMDDGIVDAQLMQRVFSVNVFGVVNCIEASQTHFQPGHKVVIVGSIASEFALPRAEAYGASKAAIGYFARSLSLNLQ
AKGIDVVTVFPGFVSTPLTNKNTFAMPMIITVEQASKAIRQQLASGKQHIYFPARFTALIRLLALLPYRWQKALASRLIA
Q

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=33.6734693877551, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI1787820, Length=215, Percent_Identity=26.5116279069767, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71997402, Length=184, Percent_Identity=30.4347826086957, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17567345, Length=232, Percent_Identity=26.2931034482759, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=245, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=184, Percent_Identity=28.804347826087, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=225, Percent_Identity=28, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=222, Percent_Identity=28.3783783783784, Blast_Score=75, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=31.3131313131313, Blast_Score=73, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24643142, Length=180, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=33.6734693877551, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26326; Mature: 26326

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSVLITGATSGIGKKLAKDFADEGAKVIACGRNREVLQELEQYSSAIATISFDVTDYQQ
CCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHEEEEECCCCHHH
TREALSVLPFIPNVWLFNAGDCEYMDDGIVDAQLMQRVFSVNVFGVVNCIEASQTHFQPG
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCCCC
HKVVIVGSIASEFALPRAEAYGASKAAIGYFARSLSLNLQAKGIDVVTVFPGFVSTPLTN
CEEEEEECCHHHHCCCCHHHCCCCHHHHHHHHHHHEEEEEECCEEEEEECCCHHCCCCCC
KNTFAMPMIITVEQASKAIRQQLASGKQHIYFPARFTALIRLLALLPYRWQKALASRLIA
CCCEEEEEEEEHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q
C
>Mature Secondary Structure
MNSVLITGATSGIGKKLAKDFADEGAKVIACGRNREVLQELEQYSSAIATISFDVTDYQQ
CCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHEEEEECCCCHHH
TREALSVLPFIPNVWLFNAGDCEYMDDGIVDAQLMQRVFSVNVFGVVNCIEASQTHFQPG
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCCCC
HKVVIVGSIASEFALPRAEAYGASKAAIGYFARSLSLNLQAKGIDVVTVFPGFVSTPLTN
CEEEEEECCHHHHCCCCHHHCCCCHHHHHHHHHHHEEEEEECCEEEEEECCCHHCCCCCC
KNTFAMPMIITVEQASKAIRQQLASGKQHIYFPARFTALIRLLALLPYRWQKALASRLIA
CCCEEEEEEEEHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1730672 [H]