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The map label for this gene is yciO [C]

Identifier: 37679408

GI number: 37679408

Start: 1236851

End: 1237471

Strand: Direct

Name: yciO [C]

Synonym: VV1224

Alternate gene names: 37679408

Gene position: 1236851-1237471 (Clockwise)

Preceding gene: 37679407

Following gene: 37679409

Centisome position: 36.87

GC content: 46.7

Gene sequence:

>621_bases
ATGAGCCAGTTTTTTTACGTTCATCCAGAAAACCCACAGGCTCGCTTGATTAATCAAGCCGTAGCAATCATTCGAAATGG
CGGAGTGGTGGTGTATCCAACCGATTCAGGATACGCGTTGGGCTGTCAATTAGAAAACAAGCAAGCATTAGACAGAATTT
GCCAGATCCGTCGCTTAGACGAAAAACACAACTTCACACTGTTGTGCCGTGACCTTTCAGAGTTGTCCATCTATGCACGT
GTGGATAACACGGCGTTTCGTTTGTTAAAGAACAACACTCCTGGTCCTTACACCTTTATTTTTAAAGGGACCAAAGAAGT
GCCGCGTCGTTTGATGAACGCTAAGCGTAAGACCATAGGTATTCGTGTACCCGATAACCGTATTGCCCTAGATCTGCTTG
ATGCGTTAGGTGAGCCATTGATGTCGACATCACTGATTTTGCCAGGCAAAGAGGTAACGGAAGCCGATCCAGAAGAGATC
CGCGATAAACTTGAACACGCGGTTGATGTGATTCTTAACGGGGGTTACTTGGGCGAGCAACCAACGACGGTGATTGACTT
TAGTGAAGGTGATGCGGTTGTTGCACGTATTGGCTCTGGTGACCCAGCACCATTTGAGTAA

Upstream 100 bases:

>100_bases
GTGGAAAGATTGGGGTTTAGAACCGGTAGACAAAACTCAAACCGTGTCTACGATTGCCCCAGAGCTATAGAGCCGAGAGG
TTCGATAATGAGGAATTACC

Downstream 100 bases:

>100_bases
TGATGTTAACGATGACGTATTGTTCAAAGGGAAGCTTAGCTTCCCTTTGTTTTTAAGCGACGATACTCGCACTTATCAAG
CAAAATCAAACAACTCAATA

Product: putative translation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSQFFYVHPENPQARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALDRICQIRRLDEKHNFTLLCRDLSELSIYAR
VDNTAFRLLKNNTPGPYTFIFKGTKEVPRRLMNAKRKTIGIRVPDNRIALDLLDALGEPLMSTSLILPGKEVTEADPEEI
RDKLEHAVDVILNGGYLGEQPTTVIDFSEGDAVVARIGSGDPAPFE

Sequences:

>Translated_206_residues
MSQFFYVHPENPQARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALDRICQIRRLDEKHNFTLLCRDLSELSIYAR
VDNTAFRLLKNNTPGPYTFIFKGTKEVPRRLMNAKRKTIGIRVPDNRIALDLLDALGEPLMSTSLILPGKEVTEADPEEI
RDKLEHAVDVILNGGYLGEQPTTVIDFSEGDAVVARIGSGDPAPFE
>Mature_205_residues
SQFFYVHPENPQARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALDRICQIRRLDEKHNFTLLCRDLSELSIYARV
DNTAFRLLKNNTPGPYTFIFKGTKEVPRRLMNAKRKTIGIRVPDNRIALDLLDALGEPLMSTSLILPGKEVTEADPEEIR
DKLEHAVDVILNGGYLGEQPTTVIDFSEGDAVVARIGSGDPAPFE

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=70.2439024390244, Blast_Score=312, Evalue=1e-86,
Organism=Escherichia coli, GI2367210, Length=182, Percent_Identity=25.2747252747253, Blast_Score=68, Evalue=6e-13,
Organism=Drosophila melanogaster, GI78707274, Length=119, Percent_Identity=30.2521008403361, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22925; Mature: 22793

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYVHPENPQARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALDRICQIRRLD
CCCEEEEECCCCHHHHHHHHHHHEECCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHCC
EKHNFTLLCRDLSELSIYARVDNTAFRLLKNNTPGPYTFIFKGTKEVPRRLMNAKRKTIG
CCCCEEEEEECHHHEEEEEEECCHHEEEEECCCCCCEEEEECCCHHHHHHHHCCHHHEEE
IRVPDNRIALDLLDALGEPLMSTSLILPGKEVTEADPEEIRDKLEHAVDVILNGGYLGEQ
EECCCCHHHHHHHHHCCCHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
PTTVIDFSEGDAVVARIGSGDPAPFE
CCEEEEECCCCEEEEEECCCCCCCCC
>Mature Secondary Structure 
SQFFYVHPENPQARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALDRICQIRRLD
CCEEEEECCCCHHHHHHHHHHHEECCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHCC
EKHNFTLLCRDLSELSIYARVDNTAFRLLKNNTPGPYTFIFKGTKEVPRRLMNAKRKTIG
CCCCEEEEEECHHHEEEEEEECCHHEEEEECCCCCCEEEEECCCHHHHHHHHCCHHHEEE
IRVPDNRIALDLLDALGEPLMSTSLILPGKEVTEADPEEIRDKLEHAVDVILNGGYLGEQ
EECCCCHHHHHHHHHCCCHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
PTTVIDFSEGDAVVARIGSGDPAPFE
CCEEEEECCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]