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The map label for this gene is oppC [H]

Identifier: 37679389

GI number: 37679389

Start: 1220752

End: 1221660

Strand: Direct

Name: oppC [H]

Synonym: VV1205

Alternate gene names: 37679389

Gene position: 1220752-1221660 (Clockwise)

Preceding gene: 37679388

Following gene: 37679390

Centisome position: 36.39

GC content: 46.64

Gene sequence:

>909_bases
ATGGTTATGTTGACGAAAAAAGAGAATCTGGAAGCGCTTGAGAAGTTTTCAGAAAACCTAGAAATTGAAGGCCGCAGCTT
ATGGCAAGATGCCCGCATTCGCTTTATGCGCAACAAAGCTGCGATGGTGAGTTTGTTTATCCTTATGGTGATGACACTTG
CTGTCATTTTCCTACCAATGCTAGCACCTTTCACGTTTGATGATACTGACTGGTATGCCATGCACGTTGGACCAAATGCT
GAGCATTGGTTTGGTACGGATAGTTTAGGCCGAGATTTGTACGTCCGTACCTTGATTGGTGGTCGTATCTCGCTAATGGT
GGGTGTACTTGGTGCATTGGTCGCGGTTACGATTGGTACGCTCTACGGCGCGGCCTCAGGTTTTATTGGTGGCCGTACTG
ACCGTATTATGATGCGTATTCTTGAAATCCTTTACGCAGTGCCTTTCATGTTCCTTGTTATCGTACTGGTGACATTCTTC
GGCCGTAACATTGTGCTTATCTTCGTGGCTATCGGTGCTATTGCTTGGTTGGATATGGCGCGTATTGTACGTGGTCAAAC
ACTGAGCTTACGTAGCAAAGAGTTTATCGAAGCCGCCCACGTTTGTGGTGTGAGCAAGTGGAAGATCATCACTCGCCACA
TTGTGCCAAACGTACTTGGCATTGTTGCGGTTTACTCAACACTATTGATTCCGAGCATGATTCTGACTGAATCTTTCCTT
TCATTCCTTGGTCTTGGGGTTCAAGAGCCAATGACAAGTTGGGGCGCACTTCTACAAGAAGGTTCTCAAACAATGGAAGT
GGCTATTTGGCAGTTGGCTTTCCCAGCCCTGTTCATGGTTGTCACTCTATTCTGTTTCAACTACGTCGGTGATGGCTTGC
GCGATGCGCTGGATCCAAAAGACAGATAA

Upstream 100 bases:

>100_bases
TAACGATTCTGATCGGTTTCTTGTTTATTCTGTTCAACGCCATTGTAGATATTCTGTTGGCGATGATTGATCCGAAAATT
CGCTACTAACAGGGACGTAT

Downstream 100 bases:

>100_bases
TTAGAACGATAAGATTAAGGAAGCAATGATGAGCTTATTAGATGTCAAAGATCTGCGCGTCGAATTTACCACGCAAGATG
GTATCGTGACCGCAGTAAAC

Product: oligopeptide ABC transporter, permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MVMLTKKENLEALEKFSENLEIEGRSLWQDARIRFMRNKAAMVSLFILMVMTLAVIFLPMLAPFTFDDTDWYAMHVGPNA
EHWFGTDSLGRDLYVRTLIGGRISLMVGVLGALVAVTIGTLYGAASGFIGGRTDRIMMRILEILYAVPFMFLVIVLVTFF
GRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWKIITRHIVPNVLGIVAVYSTLLIPSMILTESFL
SFLGLGVQEPMTSWGALLQEGSQTMEVAIWQLAFPALFMVVTLFCFNYVGDGLRDALDPKDR

Sequences:

>Translated_302_residues
MVMLTKKENLEALEKFSENLEIEGRSLWQDARIRFMRNKAAMVSLFILMVMTLAVIFLPMLAPFTFDDTDWYAMHVGPNA
EHWFGTDSLGRDLYVRTLIGGRISLMVGVLGALVAVTIGTLYGAASGFIGGRTDRIMMRILEILYAVPFMFLVIVLVTFF
GRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWKIITRHIVPNVLGIVAVYSTLLIPSMILTESFL
SFLGLGVQEPMTSWGALLQEGSQTMEVAIWQLAFPALFMVVTLFCFNYVGDGLRDALDPKDR
>Mature_302_residues
MVMLTKKENLEALEKFSENLEIEGRSLWQDARIRFMRNKAAMVSLFILMVMTLAVIFLPMLAPFTFDDTDWYAMHVGPNA
EHWFGTDSLGRDLYVRTLIGGRISLMVGVLGALVAVTIGTLYGAASGFIGGRTDRIMMRILEILYAVPFMFLVIVLVTFF
GRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWKIITRHIVPNVLGIVAVYSTLLIPSMILTESFL
SFLGLGVQEPMTSWGALLQEGSQTMEVAIWQLAFPALFMVVTLFCFNYVGDGLRDALDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=302, Percent_Identity=68.5430463576159, Blast_Score=388, Evalue=1e-109,
Organism=Escherichia coli, GI1787054, Length=277, Percent_Identity=39.3501805054152, Blast_Score=212, Evalue=2e-56,
Organism=Escherichia coli, GI1787760, Length=290, Percent_Identity=35.1724137931034, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1789889, Length=238, Percent_Identity=33.6134453781513, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789964, Length=272, Percent_Identity=34.9264705882353, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=32.3008849557522, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1787549, Length=279, Percent_Identity=26.8817204301075, Blast_Score=98, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33730; Mature: 33730

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMLTKKENLEALEKFSENLEIEGRSLWQDARIRFMRNKAAMVSLFILMVMTLAVIFLPM
CEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAPFTFDDTDWYAMHVGPNAEHWFGTDSLGRDLYVRTLIGGRISLMVGVLGALVAVTIGT
HCCCCCCCCCEEEEEECCCCCCCCCCCHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LYGAASGFIGGRTDRIMMRILEILYAVPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RIVRGQTLSLRSKEFIEAAHVCGVSKWKIITRHIVPNVLGIVAVYSTLLIPSMILTESFL
HHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLGLGVQEPMTSWGALLQEGSQTMEVAIWQLAFPALFMVVTLFCFNYVGDGLRDALDPK
HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC
DR
CC
>Mature Secondary Structure
MVMLTKKENLEALEKFSENLEIEGRSLWQDARIRFMRNKAAMVSLFILMVMTLAVIFLPM
CEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAPFTFDDTDWYAMHVGPNAEHWFGTDSLGRDLYVRTLIGGRISLMVGVLGALVAVTIGT
HCCCCCCCCCEEEEEECCCCCCCCCCCHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LYGAASGFIGGRTDRIMMRILEILYAVPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RIVRGQTLSLRSKEFIEAAHVCGVSKWKIITRHIVPNVLGIVAVYSTLLIPSMILTESFL
HHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFLGLGVQEPMTSWGALLQEGSQTMEVAIWQLAFPALFMVVTLFCFNYVGDGLRDALDPK
HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC
DR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]