| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is luxQ [H]
Identifier: 37679341
GI number: 37679341
Start: 1171277
End: 1173433
Strand: Direct
Name: luxQ [H]
Synonym: VV1157
Alternate gene names: 37679341
Gene position: 1171277-1173433 (Clockwise)
Preceding gene: 37679340
Following gene: 37679342
Centisome position: 34.92
GC content: 45.9
Gene sequence:
>2157_bases ATGGCAATGATAACGATTTGTCCTGAAACGCTTCCCATTGGTTGGCTTTCAATCACTCAAGAAGGATGGATTGAAGCGTA TAACCAGCAAGCACAATCTTGTGAGCTTTGGCATCAACCCTTGATGGTAGGGGAAGCACTCACGTGCGTTCATCCCAGTC TAATCTTTTATGAATGGGTAAAGCAGCTTTCCGCTCAATCCCCGCCACTCAGCATCATGTCTACCCGCGCGACGCATTGG ACGCTTTCGGCAAGCCCAAGAACGCAAGGTGGTTTCGATTTATGGTTACAAGAAGCCGTTTGTGATGATGCGCTCAGGGA CGAAAATACCCGCTTACGTCGTGACATTGAACGGCTTGACTTTGCTGCTCAAGGCGCGAATTTGGGCATTTGGGATTTCA ATCCGTCAACGGGCTGTATCTTTGGCAATAAAACGTGGGCGACACAGAAAAAACTCGAACCTAATCATTTGTTTGCTGAT GATGCTCTGTTTTCTGAGATCATCAATGGCATCGAAAAATGGTCTGAAATCGTTCACCCTGATGACGTGGCTGAAACCAC AGATAAGATTCAAGCCCATTTAGACGGTGAGACGGAACTCTACCATGCCGAGTTTCGCGTACGTTGCGGTGATGGTCAGT GGAAATGGATTTTAGATCTTGGGCGAGTGTTCGAACGCGATCAAGATGGTGTCCCTGTGCGCATGAATGGCATCCATGTT GATATCGATAAACTCAAGCGCCTGCAACAGAGTCTTTCTGAAACCAAAGACAAAGCGGAAGTGGCAAACCGTGCAAAATC GATTTTTTTAGCCAACATGAGCCATGAGCTTCGCACACCGTTGAATGCCGTGTTGGGCTATACGCAGTTGATGAAGTGCG ATCAACGCTTAACTGCAAAACACCACGAATATCTCGAAATCATTAACCGCTCTGGTGAGCACCTGTTATCGCTGATCAAC GATGTGTTGGACATGTCAAAGATCGACGCTGGCCATAGTGTAGTAGAGCGCAAGTGGTTTAATTTCCGAGAAGTTTCTGA AGAGATTAATGACCTCATGCAGATGAAGGCAATGCAAAAGCAACTGACATTGCACTGCCGCGTTGAAGATTCAGTACCGC ATTTTGTATTAGGTGATGTCGTGAAAACGCGACAAGTGCTGATCAACTTGCTGGGAAATGCGATTAAATTTACATATCGA GGCAATGTCCGTTTAAACATTGCCAGCGAGGCTTTGCAAAATGGCCAGCACAAAGTAACGTTTGAAGTGAGTGATTCGGG CATTGGTATTAGTGAAGAAAACCAAGAACGCGTCTTCCAACCTTTTGAGCAACTGGATTCTGATATTACGCAAAATGGCA CAGGGCTGGGATTGAGCATCAGTAAGCAGTTTGTCGAACTGATGGGAGGCCAATTGGTGCTCAAAAGTGAGCTTCATCGA GGCTCTACTTTCTCATTCAGTCTTGTGATGGAAACCAGTGAGCATTTGGTTGAAAACAAGCCTGCGAATTTGCCCAGAGT CTTAGGGTTAAAAAGTGGTTCATTCAGTCCTAAGATTTTGATCGCAGAAGACCAGCTAGACAACCAGACGTTGCTTGCCA CGCTTTTGCAGGAAGCGGGCTTTACCGTCAAACTGGCCAGAGACGGCGAAGAAGCGGTTGCTCTGCATAAGAGTTGGGGC CCTGATTTTATTTGGATGGATCGTCGTATGCCGAAAAAAGATGGCTTGCAAGCAACCAAAGAAATCCGCGCCGCCTCAGA GAACAGCCAGGTAAAAATTGTTGCCTTGACCGCCAGTGTCTTTAATGACGAGATAGAAGAGATGTTAGCGTCAGGTATGG ATGATTTTGCGCGTAAGCCGTTTATGCCGCAAGATTTGTTTTACATGATGAAGAAGCATCTCGATCTCGATTATGACTAT GAACAGAGGCAAGACGAGGCAGAGAACACATCCTTCGATGACTTGGATTTGAGCTTTTTGGATGATTTAACCCACGAGTC GACTCAAGATATTGTTGAAGCGATAGAGCAAGGGCAACAGCAGGAGCTCTATTACTTGTTCGAACAAATGATAGCGAACA GTGAGGTTCGCACCCGTCTAAACAGCTTGGTAGAGAACTATCAATTTGATGAGCTTTACGAGTTATTTCAAGAATAA
Upstream 100 bases:
>100_bases GAGATCCTTACTCTGAAGGTGGGCGTTAGGTCTTCGCACTCCTCGTTAACAAAAGCAAGCAATCAAAGGACAATGTCTTC GAAGGGCATTGAGCAAGGGA
Downstream 100 bases:
>100_bases AAAAGGGCATTGCGGGAAAAGCGTCGCAATGAAAGCAGATGAAAGTAGAACCATCGAATACGGAAATTTTGGTTGTTGAT GATACCGTTGATAACGTCAA
Product: signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 718; Mature: 717
Protein sequence:
>718_residues MAMITICPETLPIGWLSITQEGWIEAYNQQAQSCELWHQPLMVGEALTCVHPSLIFYEWVKQLSAQSPPLSIMSTRATHW TLSASPRTQGGFDLWLQEAVCDDALRDENTRLRRDIERLDFAAQGANLGIWDFNPSTGCIFGNKTWATQKKLEPNHLFAD DALFSEIINGIEKWSEIVHPDDVAETTDKIQAHLDGETELYHAEFRVRCGDGQWKWILDLGRVFERDQDGVPVRMNGIHV DIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQRLTAKHHEYLEIINRSGEHLLSLIN DVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYR GNVRLNIASEALQNGQHKVTFEVSDSGIGISEENQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKSELHR GSTFSFSLVMETSEHLVENKPANLPRVLGLKSGSFSPKILIAEDQLDNQTLLATLLQEAGFTVKLARDGEEAVALHKSWG PDFIWMDRRMPKKDGLQATKEIRAASENSQVKIVALTASVFNDEIEEMLASGMDDFARKPFMPQDLFYMMKKHLDLDYDY EQRQDEAENTSFDDLDLSFLDDLTHESTQDIVEAIEQGQQQELYYLFEQMIANSEVRTRLNSLVENYQFDELYELFQE
Sequences:
>Translated_718_residues MAMITICPETLPIGWLSITQEGWIEAYNQQAQSCELWHQPLMVGEALTCVHPSLIFYEWVKQLSAQSPPLSIMSTRATHW TLSASPRTQGGFDLWLQEAVCDDALRDENTRLRRDIERLDFAAQGANLGIWDFNPSTGCIFGNKTWATQKKLEPNHLFAD DALFSEIINGIEKWSEIVHPDDVAETTDKIQAHLDGETELYHAEFRVRCGDGQWKWILDLGRVFERDQDGVPVRMNGIHV DIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQRLTAKHHEYLEIINRSGEHLLSLIN DVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYR GNVRLNIASEALQNGQHKVTFEVSDSGIGISEENQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKSELHR GSTFSFSLVMETSEHLVENKPANLPRVLGLKSGSFSPKILIAEDQLDNQTLLATLLQEAGFTVKLARDGEEAVALHKSWG PDFIWMDRRMPKKDGLQATKEIRAASENSQVKIVALTASVFNDEIEEMLASGMDDFARKPFMPQDLFYMMKKHLDLDYDY EQRQDEAENTSFDDLDLSFLDDLTHESTQDIVEAIEQGQQQELYYLFEQMIANSEVRTRLNSLVENYQFDELYELFQE >Mature_717_residues AMITICPETLPIGWLSITQEGWIEAYNQQAQSCELWHQPLMVGEALTCVHPSLIFYEWVKQLSAQSPPLSIMSTRATHWT LSASPRTQGGFDLWLQEAVCDDALRDENTRLRRDIERLDFAAQGANLGIWDFNPSTGCIFGNKTWATQKKLEPNHLFADD ALFSEIINGIEKWSEIVHPDDVAETTDKIQAHLDGETELYHAEFRVRCGDGQWKWILDLGRVFERDQDGVPVRMNGIHVD IDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQRLTAKHHEYLEIINRSGEHLLSLIND VLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRG NVRLNIASEALQNGQHKVTFEVSDSGIGISEENQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKSELHRG STFSFSLVMETSEHLVENKPANLPRVLGLKSGSFSPKILIAEDQLDNQTLLATLLQEAGFTVKLARDGEEAVALHKSWGP DFIWMDRRMPKKDGLQATKEIRAASENSQVKIVALTASVFNDEIEEMLASGMDDFARKPFMPQDLFYMMKKHLDLDYDYE QRQDEAENTSFDDLDLSFLDDLTHESTQDIVEAIEQGQQQELYYLFEQMIANSEVRTRLNSLVENYQFDELYELFQE
Specific function: At low cell density, in absence of autoinducer has a kinase activity, and autophosphorylates on a histidine residue. The phosphoryl group is then transferred to an aspartate residue in the response regulator domain. The phosphoryl group is transferred to
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1789149, Length=253, Percent_Identity=41.1067193675889, Blast_Score=197, Evalue=2e-51, Organism=Escherichia coli, GI48994928, Length=460, Percent_Identity=30, Blast_Score=189, Evalue=6e-49, Organism=Escherichia coli, GI1788713, Length=477, Percent_Identity=29.979035639413, Blast_Score=185, Evalue=1e-47, Organism=Escherichia coli, GI87081816, Length=395, Percent_Identity=29.873417721519, Blast_Score=162, Evalue=8e-41, Organism=Escherichia coli, GI145693157, Length=260, Percent_Identity=34.2307692307692, Blast_Score=154, Evalue=2e-38, Organism=Escherichia coli, GI1786912, Length=264, Percent_Identity=26.1363636363636, Blast_Score=89, Evalue=9e-19, Organism=Escherichia coli, GI1788549, Length=240, Percent_Identity=26.25, Blast_Score=80, Evalue=5e-16, Organism=Escherichia coli, GI1786600, Length=234, Percent_Identity=26.9230769230769, Blast_Score=80, Evalue=6e-16, Organism=Escherichia coli, GI1787894, Length=280, Percent_Identity=27.8571428571429, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1790436, Length=219, Percent_Identity=26.027397260274, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1790346, Length=201, Percent_Identity=29.3532338308458, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1788393, Length=253, Percent_Identity=24.1106719367589, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1786783, Length=258, Percent_Identity=25.5813953488372, Blast_Score=70, Evalue=6e-13, Organism=Escherichia coli, GI87082128, Length=232, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=6e-12, Organism=Escherichia coli, GI1790861, Length=294, Percent_Identity=25.1700680272109, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1788279, Length=202, Percent_Identity=24.7524752475248, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1788550, Length=119, Percent_Identity=31.9327731092437, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323034, Length=210, Percent_Identity=29.0476190476191, Blast_Score=67, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6322000, Length=116, Percent_Identity=31.0344827586207, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322044, Length=125, Percent_Identity=40, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR015387 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 - ProDom: PD142495 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF09308 LuxQ-periplasm; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 81944; Mature: 81812
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMITICPETLPIGWLSITQEGWIEAYNQQAQSCELWHQPLMVGEALTCVHPSLIFYEWV CCEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH KQLSAQSPPLSIMSTRATHWTLSASPRTQGGFDLWLQEAVCDDALRDENTRLRRDIERLD HHHCCCCCCCHHEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH FAAQGANLGIWDFNPSTGCIFGNKTWATQKKLEPNHLFADDALFSEIINGIEKWSEIVHP HHHCCCCEEEEECCCCCCEEECCCCCCHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC DDVAETTDKIQAHLDGETELYHAEFRVRCGDGQWKWILDLGRVFERDQDGVPVRMNGIHV CHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEECCEEE DIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQRLTAK CHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHCHHHHHHHHHHHHHHHHHHHHH HHEYLEIINRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKAMQK HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH QLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRGNVRLNIASEALQNGQHKVT HCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEHHHHHHCCCEEEE FEVSDSGIGISEENQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKSELHR EEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEHHHCC GSTFSFSLVMETSEHLVENKPANLPRVLGLKSGSFSPKILIAEDQLDNQTLLATLLQEAG CCCEEEEEEEHHHHHHHCCCCCCCCCEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCC FTVKLARDGEEAVALHKSWGPDFIWMDRRMPKKDGLQATKEIRAASENSQVKIVALTASV CEEEEECCCCHHEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEHHH FNDEIEEMLASGMDDFARKPFMPQDLFYMMKKHLDLDYDYEQRQDEAENTSFDDLDLSFL HHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHCHHCCCCCCCCCHHHH DDLTHESTQDIVEAIEQGQQQELYYLFEQMIANSEVRTRLNSLVENYQFDELYELFQE HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHC >Mature Secondary Structure AMITICPETLPIGWLSITQEGWIEAYNQQAQSCELWHQPLMVGEALTCVHPSLIFYEWV CEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH KQLSAQSPPLSIMSTRATHWTLSASPRTQGGFDLWLQEAVCDDALRDENTRLRRDIERLD HHHCCCCCCCHHEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH FAAQGANLGIWDFNPSTGCIFGNKTWATQKKLEPNHLFADDALFSEIINGIEKWSEIVHP HHHCCCCEEEEECCCCCCEEECCCCCCHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC DDVAETTDKIQAHLDGETELYHAEFRVRCGDGQWKWILDLGRVFERDQDGVPVRMNGIHV CHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEECCEEE DIDKLKRLQQSLSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLMKCDQRLTAK CHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHCHHHHHHHHHHHHHHHHHHHHH HHEYLEIINRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKAMQK HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH QLTLHCRVEDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRGNVRLNIASEALQNGQHKVT HCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEHHHHHHCCCEEEE FEVSDSGIGISEENQERVFQPFEQLDSDITQNGTGLGLSISKQFVELMGGQLVLKSELHR EEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEHHHCC GSTFSFSLVMETSEHLVENKPANLPRVLGLKSGSFSPKILIAEDQLDNQTLLATLLQEAG CCCEEEEEEEHHHHHHHCCCCCCCCCEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCC FTVKLARDGEEAVALHKSWGPDFIWMDRRMPKKDGLQATKEIRAASENSQVKIVALTASV CEEEEECCCCHHEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEHHH FNDEIEEMLASGMDDFARKPFMPQDLFYMMKKHLDLDYDYEQRQDEAENTSFDDLDLSFL HHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHCHHCCCCCCCCCHHHH DDLTHESTQDIVEAIEQGQQQELYYLFEQMIANSEVRTRLNSLVENYQFDELYELFQE HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA