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The map label for this gene is ybaV [H]

Identifier: 37679293

GI number: 37679293

Start: 1117577

End: 1117879

Strand: Direct

Name: ybaV [H]

Synonym: VV1109

Alternate gene names: 37679293

Gene position: 1117577-1117879 (Clockwise)

Preceding gene: 37679292

Following gene: 37679295

Centisome position: 33.32

GC content: 38.28

Gene sequence:

>303_bases
ATGAAACAGGTATTTACTCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGATTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGATTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA

Upstream 100 bases:

>100_bases
ACAGGTCGCTTTCGCGGCCTGTTTTATTTTTGTCTCTTGTCTGTTTTGTGCTCTCGCTGGGTTAGGTATAACACCTTGCA
CCTAACATGAGGACACGACA

Downstream 100 bases:

>100_bases
TTGGATGACAAAGCAAGTTGGCGTGCTGTCAGCTTGCTTTATGTCTTTATTGCGCTTTGGCGTTAAGGTAACGCTGGTAA
AGAGGGGGCAGCGAGGCTAA

Product: DNA uptake protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 100

Protein sequence:

>100_residues
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDDL
AQVKGIGKSTIEKNQSRIKL

Sequences:

>Translated_100_residues
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDDL
AQVKGIGKSTIEKNQSRIKL
>Mature_100_residues
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDDL
AQVKGIGKSTIEKNQSRIKL

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=74, Percent_Identity=54.0540540540541, Blast_Score=79, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10887; Mature: 10887

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKK
CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCHHH
AQQIVDFREANGPFKTVDDLAQVKGIGKSTIEKNQSRIKL
HHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHCCHHHCCC
>Mature Secondary Structure
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKK
CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCHHH
AQQIVDFREANGPFKTVDDLAQVKGIGKSTIEKNQSRIKL
HHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]