| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
Click here to switch to the map view.
The map label for this gene is lon [H]
Identifier: 37679290
GI number: 37679290
Start: 1112591
End: 1114942
Strand: Direct
Name: lon [H]
Synonym: VV1106
Alternate gene names: 37679290
Gene position: 1112591-1114942 (Clockwise)
Preceding gene: 37679289
Following gene: 37679291
Centisome position: 33.17
GC content: 47.28
Gene sequence:
>2352_bases ATGAACTTGGAACGTTCCGAGCGTATCGAGATCCCCGTCCTACCTCTACGAGATGTGGTGGTTTATCCACACATGGTTAT CCCTTTGTTTGTTGGCCGTGAAAAGTCGATCAGTTGCTTAGAATCGGCAATGGAAGCCAATAAACAGGTTTTGCTTGTCG CACAAAAGCAAGCAGACACAGATGAACCAACCGTTGATGACTTGTTCGAGGTGGGCACGGTAGCCACGATCCTGCAACTG CTTAAACTGCCAGACGGTACGGTAAAAGTACTGGTTGAAGGCCAGCAGCGCGCTAAAATCAATCAGTTCAAGGAAAGTGA TTTCTTCTTAGCAGAAGCGGAATTTATCGTCACTCCTGAATTGGATGAGCGTGAGCAAGAAGTGATTGTTCGCAGCGCCA TTAGCCAATTTGAAGGCTTCATTAAACTGAATAAGAAGATTCCACCAGAAGTCCTGACTTCCCTAGGTGGCATTGATGAA GCTGCCCGCCTTGCAGACACGATTGCTGCCCATATGCCACTGAAGTTAGCGGATAAGCAGCAAGTACTAGAAACCGTAGA TATTACCGAGCGTCTAGAGTTCCTGATGGGGCAAATGGAATCGGAAATCGACATTCTGCAAGTTGAAAAGCGCATCCGTA ACCGCGTCAAGAAACAGATGGAGAAATCCCAGCGCGAGTACTATCTGAATGAGCAAATGAAAGCGATTCAGAAAGAGCTT GGCGAATCTGAAGATGGCGTAGATGAGTTTGAAGCGCTCAAGCAAAAGATTGATTCGGCTAAAATGCCGAAAGAAGCACG CGAAAAGACCGAACAAGAACTGCAAAAGCTGAAGATGATGTCACCGATGTCAGCGGAAGCGACAGTTGTGCGCAGCTACA TTGATTGGATGGTCAACGTTCCTTGGAACAAACGTTCTAAAGTGAAGAAAGACTTGGCGAAAGCGGAAGAAGTGCTCAAT GAAGACCATTACGGCCTTGAGCGCGTAAAAGACCGCATTCTAGAGTATTTGGCGGTTCAAAACCGTATCAATAAGCTAAA AGGCCCGATTCTTTGCCTTGTGGGGCCTCCTGGTGTGGGTAAAACTTCGTTAGGTCGCTCAATTGCCGCAGCAACAGGTC GTCAATACGTTCGTATGGCGCTCGGTGGTGTTCGAGATGAAGCCGAGATCCGTGGCCATCGCCGCACGTATATTGGTTCG CTTCCGGGTAAACTGATTCAAAAAATGGCCAAAGTTGGCGTGAAGAATCCACTCTTCTTGTTGGATGAGATCGACAAAAT GTCATCTGACATGCGTGGCGATCCCGCGTCTGCATTACTTGAAGTGCTGGACCCAGAACAGAACAACTCGTTCAATGATC ACTACTTAGAAGTGGATTACGATCTGTCTGACGTGATGTTTGTTGCAACTTCGAACTCAATGAATATTCCAGGTCCTTTA CTTGACCGTATGGAAGTGATTCGTTTATCTGGTTACACAGAAGATGAAAAACTCAACATTGCGAAGCGCCACTTGGTTGC GAAGCAGGTCGAGCGTAATGGCTTGAAGCCTCATGAAATCAATATCGAGGACTCTGCCATTATTGGTATTATCCGCTTCT ATACGCGTGAAGCGGGTGTGCGTAGTTTAGAGCGTGAGATTTCGAAAATCTGTCGTAAAGCAGTGAAGAACATTCTGCTG AAGCCAGAGTTGAAGTCCGTGACAGTTAACATCGATAACTTGAAAGAGTACTTAGGTGTTCAACGCTTTGACTATGGTAA AGCGGATGACAGTAACCGAGTGGGCCAAGTGACCGGTCTTGCGTGGACGGAAGTCGGTGGCGATTTGCTGACGATTGAGA CTGAGGCGATGCCGGGCAAAGGTAAACTGACCCAAACTGGCTCACTGGGTGACGTGATGCAGGAGTCGATTCAAGCGGCC ATGACCGTTGTGCGCTCTCGTGCGGAGAAATTGGGTATTAACTCTGATTTCTACGAGAAGAAAGACATCCATGTGCACGT TCCAGAAGGTGCAACACCAAAAGATGGCCCAAGTGCCGGTATTGCGATGTGCACGGCGTTAGTCTCTAGCCTAACGGGTA ACCCTGTCAAAGCAGAAGTCGCCATGACGGGTGAGATTACTCTGCGTGGTGAAGTGTTACCAATTGGTGGTCTAAAAGAG AAGTTGTTGGCTGCACATCGTGGTGGTATTACAACGGTACTTATTCCGAAGGATAATGAGCGTGATCTGGAAGAAATTCC AGACAACGTTATCGCTGATTTGAAAGTCATTCCAGTTCAATGGATTGATGAAGTTCTTAAAGTTGCACTAGAGCGAGACC CAACTGGGGTGGAGTTTGACGCTAAAAAATAG
Upstream 100 bases:
>100_bases AAGGAGGTAAGGAATTACCTCCTTTTTTATTTTCTTTTATTGAATCCAAATAATTAGCCCCCATATACTGCTCATAATAG TAAGTGGAAGAGAGAATTAT
Downstream 100 bases:
>100_bases TGATGTGCAGCAAAAATAAGTAAAAGTTTACGCTGATAGGCTCGAAAAGGCTTGTCAGCGTTTTTTTTGGGAGCTAAGTT AGAGCTCGATGGCTGCCAGC
Product: ATP-dependent Lon protease
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 783; Mature: 783
Protein sequence:
>783_residues MNLERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSISCLESAMEANKQVLLVAQKQADTDEPTVDDLFEVGTVATILQL LKLPDGTVKVLVEGQQRAKINQFKESDFFLAEAEFIVTPELDEREQEVIVRSAISQFEGFIKLNKKIPPEVLTSLGGIDE AARLADTIAAHMPLKLADKQQVLETVDITERLEFLMGQMESEIDILQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKEL GESEDGVDEFEALKQKIDSAKMPKEAREKTEQELQKLKMMSPMSAEATVVRSYIDWMVNVPWNKRSKVKKDLAKAEEVLN EDHYGLERVKDRILEYLAVQNRINKLKGPILCLVGPPGVGKTSLGRSIAAATGRQYVRMALGGVRDEAEIRGHRRTYIGS LPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNNSFNDHYLEVDYDLSDVMFVATSNSMNIPGPL LDRMEVIRLSGYTEDEKLNIAKRHLVAKQVERNGLKPHEINIEDSAIIGIIRFYTREAGVRSLEREISKICRKAVKNILL KPELKSVTVNIDNLKEYLGVQRFDYGKADDSNRVGQVTGLAWTEVGGDLLTIETEAMPGKGKLTQTGSLGDVMQESIQAA MTVVRSRAEKLGINSDFYEKKDIHVHVPEGATPKDGPSAGIAMCTALVSSLTGNPVKAEVAMTGEITLRGEVLPIGGLKE KLLAAHRGGITTVLIPKDNERDLEEIPDNVIADLKVIPVQWIDEVLKVALERDPTGVEFDAKK
Sequences:
>Translated_783_residues MNLERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSISCLESAMEANKQVLLVAQKQADTDEPTVDDLFEVGTVATILQL LKLPDGTVKVLVEGQQRAKINQFKESDFFLAEAEFIVTPELDEREQEVIVRSAISQFEGFIKLNKKIPPEVLTSLGGIDE AARLADTIAAHMPLKLADKQQVLETVDITERLEFLMGQMESEIDILQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKEL GESEDGVDEFEALKQKIDSAKMPKEAREKTEQELQKLKMMSPMSAEATVVRSYIDWMVNVPWNKRSKVKKDLAKAEEVLN EDHYGLERVKDRILEYLAVQNRINKLKGPILCLVGPPGVGKTSLGRSIAAATGRQYVRMALGGVRDEAEIRGHRRTYIGS LPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNNSFNDHYLEVDYDLSDVMFVATSNSMNIPGPL LDRMEVIRLSGYTEDEKLNIAKRHLVAKQVERNGLKPHEINIEDSAIIGIIRFYTREAGVRSLEREISKICRKAVKNILL KPELKSVTVNIDNLKEYLGVQRFDYGKADDSNRVGQVTGLAWTEVGGDLLTIETEAMPGKGKLTQTGSLGDVMQESIQAA MTVVRSRAEKLGINSDFYEKKDIHVHVPEGATPKDGPSAGIAMCTALVSSLTGNPVKAEVAMTGEITLRGEVLPIGGLKE KLLAAHRGGITTVLIPKDNERDLEEIPDNVIADLKVIPVQWIDEVLKVALERDPTGVEFDAKK >Mature_783_residues MNLERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSISCLESAMEANKQVLLVAQKQADTDEPTVDDLFEVGTVATILQL LKLPDGTVKVLVEGQQRAKINQFKESDFFLAEAEFIVTPELDEREQEVIVRSAISQFEGFIKLNKKIPPEVLTSLGGIDE AARLADTIAAHMPLKLADKQQVLETVDITERLEFLMGQMESEIDILQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKEL GESEDGVDEFEALKQKIDSAKMPKEAREKTEQELQKLKMMSPMSAEATVVRSYIDWMVNVPWNKRSKVKKDLAKAEEVLN EDHYGLERVKDRILEYLAVQNRINKLKGPILCLVGPPGVGKTSLGRSIAAATGRQYVRMALGGVRDEAEIRGHRRTYIGS LPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNNSFNDHYLEVDYDLSDVMFVATSNSMNIPGPL LDRMEVIRLSGYTEDEKLNIAKRHLVAKQVERNGLKPHEINIEDSAIIGIIRFYTREAGVRSLEREISKICRKAVKNILL KPELKSVTVNIDNLKEYLGVQRFDYGKADDSNRVGQVTGLAWTEVGGDLLTIETEAMPGKGKLTQTGSLGDVMQESIQAA MTVVRSRAEKLGINSDFYEKKDIHVHVPEGATPKDGPSAGIAMCTALVSSLTGNPVKAEVAMTGEITLRGEVLPIGGLKE KLLAAHRGGITTVLIPKDNERDLEEIPDNVIADLKVIPVQWIDEVLKVALERDPTGVEFDAKK
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=775, Percent_Identity=39.4838709677419, Blast_Score=535, Evalue=1e-152, Organism=Homo sapiens, GI21396489, Length=829, Percent_Identity=36.0675512665862, Blast_Score=504, Evalue=1e-142, Organism=Escherichia coli, GI1786643, Length=779, Percent_Identity=82.0282413350449, Blast_Score=1303, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=653, Percent_Identity=39.6630934150077, Blast_Score=489, Evalue=1e-138, Organism=Caenorhabditis elegans, GI17556486, Length=805, Percent_Identity=33.167701863354, Blast_Score=427, Evalue=1e-120, Organism=Saccharomyces cerevisiae, GI6319449, Length=671, Percent_Identity=40.3874813710879, Blast_Score=493, Evalue=1e-140, Organism=Drosophila melanogaster, GI24666867, Length=626, Percent_Identity=44.5686900958466, Blast_Score=529, Evalue=1e-150, Organism=Drosophila melanogaster, GI221513036, Length=626, Percent_Identity=44.5686900958466, Blast_Score=529, Evalue=1e-150,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 87460; Mature: 87460
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS01046 LON_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSISCLESAMEANKQVLLVAQKQADT CCCCCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEECCCCC DEPTVDDLFEVGTVATILQLLKLPDGTVKVLVEGQQRAKINQFKESDFFLAEAEFIVTPE CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEEECCEEECCC LDEREQEVIVRSAISQFEGFIKLNKKIPPEVLTSLGGIDEAARLADTIAAHMPLKLADKQ CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCHHCCHH QVLETVDITERLEFLMGQMESEIDILQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKEL HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GESEDGVDEFEALKQKIDSAKMPKEAREKTEQELQKLKMMSPMSAEATVVRSYIDWMVNV CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEC PWNKRSKVKKDLAKAEEVLNEDHYGLERVKDRILEYLAVQNRINKLKGPILCLVGPPGVG CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC KTSLGRSIAAATGRQYVRMALGGVRDEAEIRGHRRTYIGSLPGKLIQKMAKVGVKNPLFL CHHHCHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHCCCCCCHHH LDEIDKMSSDMRGDPASALLEVLDPEQNNSFNDHYLEVDYDLSDVMFVATSNSMNIPGPL HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCHHH LDRMEVIRLSGYTEDEKLNIAKRHLVAKQVERNGLKPHEINIEDSAIIGIIRFYTREAGV HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHH RSLEREISKICRKAVKNILLKPELKSVTVNIDNLKEYLGVQRFDYGKADDSNRVGQVTGL HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCEEECE AWTEVGGDLLTIETEAMPGKGKLTQTGSLGDVMQESIQAAMTVVRSRAEKLGINSDFYEK EHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC KDIHVHVPEGATPKDGPSAGIAMCTALVSSLTGNPVKAEVAMTGEITLRGEVLPIGGLKE CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECEEEECCCHHH KLLAAHRGGITTVLIPKDNERDLEEIPDNVIADLKVIPVQWIDEVLKVALERDPTGVEFD HHHHHHCCCEEEEEECCCCCCHHHHCCHHHHHCCEEECHHHHHHHHHHHHCCCCCCCCCC AKK CCC >Mature Secondary Structure MNLERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSISCLESAMEANKQVLLVAQKQADT CCCCCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEECCCCC DEPTVDDLFEVGTVATILQLLKLPDGTVKVLVEGQQRAKINQFKESDFFLAEAEFIVTPE CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEEECCEEECCC LDEREQEVIVRSAISQFEGFIKLNKKIPPEVLTSLGGIDEAARLADTIAAHMPLKLADKQ CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCHHCCHH QVLETVDITERLEFLMGQMESEIDILQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKEL HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GESEDGVDEFEALKQKIDSAKMPKEAREKTEQELQKLKMMSPMSAEATVVRSYIDWMVNV CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEC PWNKRSKVKKDLAKAEEVLNEDHYGLERVKDRILEYLAVQNRINKLKGPILCLVGPPGVG CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC KTSLGRSIAAATGRQYVRMALGGVRDEAEIRGHRRTYIGSLPGKLIQKMAKVGVKNPLFL CHHHCHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCHHHHHHHHHHCCCCCCHHH LDEIDKMSSDMRGDPASALLEVLDPEQNNSFNDHYLEVDYDLSDVMFVATSNSMNIPGPL HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCHHH LDRMEVIRLSGYTEDEKLNIAKRHLVAKQVERNGLKPHEINIEDSAIIGIIRFYTREAGV HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHH RSLEREISKICRKAVKNILLKPELKSVTVNIDNLKEYLGVQRFDYGKADDSNRVGQVTGL HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCEEECE AWTEVGGDLLTIETEAMPGKGKLTQTGSLGDVMQESIQAAMTVVRSRAEKLGINSDFYEK EHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC KDIHVHVPEGATPKDGPSAGIAMCTALVSSLTGNPVKAEVAMTGEITLRGEVLPIGGLKE CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECEEEECCCHHH KLLAAHRGGITTVLIPKDNERDLEEIPDNVIADLKVIPVQWIDEVLKVALERDPTGVEFD HHHHHHCCCEEEEEECCCCCCHHHHCCHHHHHCCEEECHHHHHHHHHHHHCCCCCCCCCC AKK CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8981986; 12620739 [H]