| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is 37679137
Identifier: 37679137
GI number: 37679137
Start: 953982
End: 954617
Strand: Direct
Name: 37679137
Synonym: VV0953
Alternate gene names: NA
Gene position: 953982-954617 (Clockwise)
Preceding gene: 37679136
Following gene: 37679138
Centisome position: 28.44
GC content: 48.27
Gene sequence:
>636_bases ATGAAAAAATGGATTGTTGTAGCGTCCGTCATGGCTTTGAGTTCATGCGCCTACTCGCCGATTTACAACGGTAAAGAACC GTACTCGGGCAGCCAATTTATGCTGATGGAAAGCCCGCGTCATACTATGGACTTCTTTGTCGAGAGCCTGACGGAAGATC TGATTCTGTCAAATACCAGTGTGTCTGCTCGCACGCCGATTGCCGTCACCTCGTTTGTTGATTTGCAGAACATGGATTCA ACCAACTGGCTTGGAAATTCCGTGTCTGAAGGCTTTATTTACCAACTTCAGCGTCGTGGCTTCAAAGTCGTGGATTTCAA AACCACGGGATCAATTCAAGTGACGCAACAAGGCGATTTTGCTTTGAGCCGTGATTGGAAAGATCTCGCACAAGAACAAG AAATCCAATATGTACTAACAGGGACCATGCTACGACAAGAAGGCGGCGTGTTAGTCAACGCTCGCGTTGTGGGGATGCAA ACTCGAGTGGTAGTGGCTTCAGCTCAAGGCTTCTTACCTGCTGAACGCATTGGCCGCGACTTGGATACATTGAACAGCAT TCGCACTCAAGATGGGGTGATCATTCGTTCAGATCCGACCATTCGTCAACCATATACCGTGATCCTGCGTCCATAG
Upstream 100 bases:
>100_bases TTGCAGAGATACAAAAGCAAAGACTGTTCCAAGATTGTAAACCAGTCGGAAAACAAAAGCAGTCTTAATGGACATCTGAG ATTATCTGGAGATTAACCCC
Downstream 100 bases:
>100_bases GGGGAGCTATGAAAAAGTATCTTATCGCTTTCGTTATGCTCCTTATAGTGGGATGCCAACCGCTGCAACAGATGCGTCAA GACGATATGCTGGTTGCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 211; Mature: 211
Protein sequence:
>211_residues MKKWIVVASVMALSSCAYSPIYNGKEPYSGSQFMLMESPRHTMDFFVESLTEDLILSNTSVSARTPIAVTSFVDLQNMDS TNWLGNSVSEGFIYQLQRRGFKVVDFKTTGSIQVTQQGDFALSRDWKDLAQEQEIQYVLTGTMLRQEGGVLVNARVVGMQ TRVVVASAQGFLPAERIGRDLDTLNSIRTQDGVIIRSDPTIRQPYTVILRP
Sequences:
>Translated_211_residues MKKWIVVASVMALSSCAYSPIYNGKEPYSGSQFMLMESPRHTMDFFVESLTEDLILSNTSVSARTPIAVTSFVDLQNMDS TNWLGNSVSEGFIYQLQRRGFKVVDFKTTGSIQVTQQGDFALSRDWKDLAQEQEIQYVLTGTMLRQEGGVLVNARVVGMQ TRVVVASAQGFLPAERIGRDLDTLNSIRTQDGVIIRSDPTIRQPYTVILRP >Mature_211_residues MKKWIVVASVMALSSCAYSPIYNGKEPYSGSQFMLMESPRHTMDFFVESLTEDLILSNTSVSARTPIAVTSFVDLQNMDS TNWLGNSVSEGFIYQLQRRGFKVVDFKTTGSIQVTQQGDFALSRDWKDLAQEQEIQYVLTGTMLRQEGGVLVNARVVGMQ TRVVVASAQGFLPAERIGRDLDTLNSIRTQDGVIIRSDPTIRQPYTVILRP
Specific function: Unknown
COG id: COG5616
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23583; Mature: 23583
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKWIVVASVMALSSCAYSPIYNGKEPYSGSQFMLMESPRHTMDFFVESLTEDLILSNTS CCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCC VSARTPIAVTSFVDLQNMDSTNWLGNSVSEGFIYQLQRRGFKVVDFKTTGSIQVTQQGDF CCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCEEEEECCCE ALSRDWKDLAQEQEIQYVLTGTMLRQEGGVLVNARVVGMQTRVVVASAQGFLPAERIGRD EECCCHHHHHHHHHEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEECCCCCCHHHHCCC LDTLNSIRTQDGVIIRSDPTIRQPYTVILRP HHHHHHHHCCCCEEEECCCCCCCCEEEEEEC >Mature Secondary Structure MKKWIVVASVMALSSCAYSPIYNGKEPYSGSQFMLMESPRHTMDFFVESLTEDLILSNTS CCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCC VSARTPIAVTSFVDLQNMDSTNWLGNSVSEGFIYQLQRRGFKVVDFKTTGSIQVTQQGDF CCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCEEEEECCCE ALSRDWKDLAQEQEIQYVLTGTMLRQEGGVLVNARVVGMQTRVVVASAQGFLPAERIGRD EECCCHHHHHHHHHEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEECCCCCCHHHHCCC LDTLNSIRTQDGVIIRSDPTIRQPYTVILRP HHHHHHHHCCCCEEEECCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA