| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is gltX
Identifier: 37679133
GI number: 37679133
Start: 950378
End: 951802
Strand: Direct
Name: gltX
Synonym: VV0949
Alternate gene names: 37679133
Gene position: 950378-951802 (Clockwise)
Preceding gene: 37679132
Following gene: 37679136
Centisome position: 28.33
GC content: 47.37
Gene sequence:
>1425_bases ATGACGGTTAAAACTCGTTTTGCTCCTAGCCCAACTGGCTACCTACACGTTGGTGGTGCTCGTACAGCACTTTACTCTTG GTTATACGCGAAAAGCCAAGGTGGTGAGTTCGTTCTACGTATCGAAGATACTGACTTAGAACGCAATTCTCAGGAAGCGG TAGATGCCATTCTTGAAGGTATGCAGTGGCTAGGTTTGGAATGGAACGAAGGTCCTTATTTCCAAACTCAGCGTTTTGAC CGTTACAACGAGATGGTTGACAAGCTGCTTGCGGAAGACAAAGCGTACAAATGTTACGCATCAAAAGAGCTGCTTGATGA AGTTCGTGCAGAGCAAGAAGCTAACAAAGAAATGCCTCGCTACGACGCTGAGCATCCAAAAATCAAAGCGGCAAATGAAG CGGCAAAAGATGGCGATCCATGCGTGATTCGTTTCCGTAACCCGAAAGAGGGTAGCGTGGTATTCGAAGATCAAATCCGT GGTCGTATCGAAATCAGCAACAGCCAAATGGATGATCTCATCATCCGTCGCACTGACGGCTCACCAACCTACAACTTCTG TGTGGTGGTTGACGACTGGGATATGGGCATTACGCACGTTATTCGTGGCGAAGACCATATCAACAACACGCCTCGTCAAA TCAACATCTATGAAGCATTAGGCGCGCCAGTCCCTACGTTTGCGCATTGTGCCATGATTCTAGGTGATGACGGTGCGAAA CTGTCTAAGCGTCATGGTGCGGTATCAGTGATGCAATACCGCGATATGGGTTACTTGCCAGTGGCATTGAACAACTACCT CGTGCGCCTTGGTTGGTCTCACGGCGACCAAGAAATTTTCTCTCAAGAAGAGATGATCAACCTATTTAGCTTGAATGCTA TCTCAAAGTCAGCGTCTGCGTTTAATACCGATAAGCTGCTTTGGTTGAATAACCACTACATCAAAACATCGGATCCTAAG TATGTGGCAGAACACCTGCAATGGCACTTGGATCAAAAGGACATCAAGACAGAAAATGGTCCAGCCATCACTGACGTGAT CAAACTGGTTGGTGAGCGTTGCAATACGTTGGTTGAGTTGGCCGATCAAATTGGTTACTTCTACCAAGATTTTGACGCAT TTGATGCAGATGCAGCGAAAAAACACTTACGTGGTGTGGCGAAGCAGCCGCTAGAAGTCGCACTGGCTAAAGTGGAAGCC CTTACTGAGTGGACAACAGAAAACCTACACCAAGTGATTGCCGATGTATGTACTGATCTTGAAATCGGTATGGGCAAAAT CGGTATGCCTCTGCGTGTTGCTGTTACTGGTGGCGGTCAGTCTCCTTCTGTGGATGCGGTGATGCAGCTCATCGGTAAAG AGCGTGTTGTTGCGCGTATTAAGATGGCGTTGGCGTTTATTGCAGAGCGTGAAGCAAACGCATAA
Upstream 100 bases:
>100_bases TGGTTGTAGATTCGTTCGACGATGGTAAAATGTCGCCACTTTTGTCCTTGAACTCGCAGTGCTTGAAATAGAGGCTGTAT TTTATCCCTAAGGAATTCTG
Downstream 100 bases:
>100_bases TTGGCCAGCGAGAATCACAAAACCGCAGCTCAGTGCTGCGGTTTTTTTTGGCTTTGCTTGAGTGCGAAAAAGAGCACGCG TTATTTGAGACCGATGCTGT
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 474; Mature: 473
Protein sequence:
>474_residues MTVKTRFAPSPTGYLHVGGARTALYSWLYAKSQGGEFVLRIEDTDLERNSQEAVDAILEGMQWLGLEWNEGPYFQTQRFD RYNEMVDKLLAEDKAYKCYASKELLDEVRAEQEANKEMPRYDAEHPKIKAANEAAKDGDPCVIRFRNPKEGSVVFEDQIR GRIEISNSQMDDLIIRRTDGSPTYNFCVVVDDWDMGITHVIRGEDHINNTPRQINIYEALGAPVPTFAHCAMILGDDGAK LSKRHGAVSVMQYRDMGYLPVALNNYLVRLGWSHGDQEIFSQEEMINLFSLNAISKSASAFNTDKLLWLNNHYIKTSDPK YVAEHLQWHLDQKDIKTENGPAITDVIKLVGERCNTLVELADQIGYFYQDFDAFDADAAKKHLRGVAKQPLEVALAKVEA LTEWTTENLHQVIADVCTDLEIGMGKIGMPLRVAVTGGGQSPSVDAVMQLIGKERVVARIKMALAFIAEREANA
Sequences:
>Translated_474_residues MTVKTRFAPSPTGYLHVGGARTALYSWLYAKSQGGEFVLRIEDTDLERNSQEAVDAILEGMQWLGLEWNEGPYFQTQRFD RYNEMVDKLLAEDKAYKCYASKELLDEVRAEQEANKEMPRYDAEHPKIKAANEAAKDGDPCVIRFRNPKEGSVVFEDQIR GRIEISNSQMDDLIIRRTDGSPTYNFCVVVDDWDMGITHVIRGEDHINNTPRQINIYEALGAPVPTFAHCAMILGDDGAK LSKRHGAVSVMQYRDMGYLPVALNNYLVRLGWSHGDQEIFSQEEMINLFSLNAISKSASAFNTDKLLWLNNHYIKTSDPK YVAEHLQWHLDQKDIKTENGPAITDVIKLVGERCNTLVELADQIGYFYQDFDAFDADAAKKHLRGVAKQPLEVALAKVEA LTEWTTENLHQVIADVCTDLEIGMGKIGMPLRVAVTGGGQSPSVDAVMQLIGKERVVARIKMALAFIAEREANA >Mature_473_residues TVKTRFAPSPTGYLHVGGARTALYSWLYAKSQGGEFVLRIEDTDLERNSQEAVDAILEGMQWLGLEWNEGPYFQTQRFDR YNEMVDKLLAEDKAYKCYASKELLDEVRAEQEANKEMPRYDAEHPKIKAANEAAKDGDPCVIRFRNPKEGSVVFEDQIRG RIEISNSQMDDLIIRRTDGSPTYNFCVVVDDWDMGITHVIRGEDHINNTPRQINIYEALGAPVPTFAHCAMILGDDGAKL SKRHGAVSVMQYRDMGYLPVALNNYLVRLGWSHGDQEIFSQEEMINLFSLNAISKSASAFNTDKLLWLNNHYIKTSDPKY VAEHLQWHLDQKDIKTENGPAITDVIKLVGERCNTLVELADQIGYFYQDFDAFDADAAKKHLRGVAKQPLEVALAKVEAL TEWTTENLHQVIADVCTDLEIGMGKIGMPLRVAVTGGGQSPSVDAVMQLIGKERVVARIKMALAFIAEREANA
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=498, Percent_Identity=30.3212851405622, Blast_Score=211, Evalue=8e-55, Organism=Homo sapiens, GI62241042, Length=370, Percent_Identity=25.4054054054054, Blast_Score=74, Evalue=4e-13, Organism=Escherichia coli, GI1788743, Length=471, Percent_Identity=69.4267515923567, Blast_Score=706, Evalue=0.0, Organism=Escherichia coli, GI226510925, Length=246, Percent_Identity=33.3333333333333, Blast_Score=135, Evalue=8e-33, Organism=Escherichia coli, GI1786895, Length=208, Percent_Identity=25.9615384615385, Blast_Score=70, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71993394, Length=488, Percent_Identity=30.5327868852459, Blast_Score=207, Evalue=1e-53, Organism=Saccharomyces cerevisiae, GI6324540, Length=494, Percent_Identity=30.5668016194332, Blast_Score=236, Evalue=9e-63, Organism=Saccharomyces cerevisiae, GI6321192, Length=217, Percent_Identity=29.9539170506912, Blast_Score=83, Evalue=9e-17, Organism=Saccharomyces cerevisiae, GI6324742, Length=213, Percent_Identity=26.2910798122066, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24665321, Length=492, Percent_Identity=31.0975609756098, Blast_Score=233, Evalue=3e-61,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 53283; Mature: 53152
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVKTRFAPSPTGYLHVGGARTALYSWLYAKSQGGEFVLRIEDTDLERNSQEAVDAILEG CCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHH MQWLGLEWNEGPYFQTQRFDRYNEMVDKLLAEDKAYKCYASKELLDEVRAEQEANKEMPR HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC YDAEHPKIKAANEAAKDGDPCVIRFRNPKEGSVVFEDQIRGRIEISNSQMDDLIIRRTDG CCCCCCCEECCCCCCCCCCCEEEEECCCCCCCEEEECCCCCEEEECCCCCCCEEEEECCC SPTYNFCVVVDDWDMGITHVIRGEDHINNTPRQINIYEALGAPVPTFAHCAMILGDDGAK CCCEEEEEEEECCCCCCEEEECCCHHCCCCCCEEEEHHHHCCCCCHHHHEEEEECCCCCH LSKRHGAVSVMQYRDMGYLPVALNNYLVRLGWSHGDQEIFSQEEMINLFSLNAISKSASA HHHHCCCEEEEEECCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC FNTDKLLWLNNHYIKTSDPKYVAEHLQWHLDQKDIKTENGPAITDVIKLVGERCNTLVEL CCCCEEEEEECCEEECCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH ADQIGYFYQDFDAFDADAAKKHLRGVAKQPLEVALAKVEALTEWTTENLHQVIADVCTDL HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EIGMGKIGMPLRVAVTGGGQSPSVDAVMQLIGKERVVARIKMALAFIAEREANA CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TVKTRFAPSPTGYLHVGGARTALYSWLYAKSQGGEFVLRIEDTDLERNSQEAVDAILEG CCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHH MQWLGLEWNEGPYFQTQRFDRYNEMVDKLLAEDKAYKCYASKELLDEVRAEQEANKEMPR HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC YDAEHPKIKAANEAAKDGDPCVIRFRNPKEGSVVFEDQIRGRIEISNSQMDDLIIRRTDG CCCCCCCEECCCCCCCCCCCEEEEECCCCCCCEEEECCCCCEEEECCCCCCCEEEEECCC SPTYNFCVVVDDWDMGITHVIRGEDHINNTPRQINIYEALGAPVPTFAHCAMILGDDGAK CCCEEEEEEEECCCCCCEEEECCCHHCCCCCCEEEEHHHHCCCCCHHHHEEEEECCCCCH LSKRHGAVSVMQYRDMGYLPVALNNYLVRLGWSHGDQEIFSQEEMINLFSLNAISKSASA HHHHCCCEEEEEECCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC FNTDKLLWLNNHYIKTSDPKYVAEHLQWHLDQKDIKTENGPAITDVIKLVGERCNTLVEL CCCCEEEEEECCEEECCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH ADQIGYFYQDFDAFDADAAKKHLRGVAKQPLEVALAKVEALTEWTTENLHQVIADVCTDL HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EIGMGKIGMPLRVAVTGGGQSPSVDAVMQLIGKERVVARIKMALAFIAEREANA CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA