| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is 37679131
Identifier: 37679131
GI number: 37679131
Start: 948403
End: 949521
Strand: Direct
Name: 37679131
Synonym: VV0946
Alternate gene names: NA
Gene position: 948403-949521 (Clockwise)
Preceding gene: 37679126
Following gene: 37679132
Centisome position: 28.27
GC content: 48.17
Gene sequence:
>1119_bases ATGTCTTACCTAAAGAAAAGCTTATTAGCAACAGCAGTGACTGGCCTAATGTTCAGTGGTGCAGCATTTGCAGAAGGTGC GAACAGCGATGCAGCAAAAAACTATTTAACTAAAGACTCTTTTGCATACGAAGTATACGGTGTAATTGCGATGCAGGCCG CTTACCGCGATTACGATTCTGGTGACGCAAAAACAGATGACAACCTAGGTGGCATGCAGTTCAACAACGAATCGCGCATT GGTTTCCGCGGTAAGAAGAACTTTGCTAACTTCGGGCCAACGTTCATTTGGCAAATTGAAGGTGGCTATGTAGACCCAAG CTTCGGCGGTGAAGGTGCTGGCCTTGGTGAACGTGATACATTCGTTGGTTTTGAAAGTGAATCAATGGGCCAAGTCCGTG TTGGTCGCGTATTGACTCCGCTTTACGAAGTGGTTGACTGGCCAGGATCGAACCCAGGTCTAGGTGATGTATACGACTGG GGTGGCGCTATCGGTGGTGCTAAGTACCAAGATCGCCAATCTAACACCATCCGTTGGGACTCTCCAATGTACGGCGAAGC ATTCTCTCTAGATGTGGCAGCTGGCGCTGGTGACAAGGCTGGCCTTGGTGAAGGCGACGATTTCTGGGCTGGCTTAGCGG CACACTACAAAATTGGTCCAATCCAATTAGACGCGGCGTACGAAGGTAACCGCAATATTGTTGCTGAAGGTCAAACTTGG GACAACGATACTTACCTAGTGGGCGTTCAAGGTTGGTTTGAAAACGGCATTTCTTTCTTCGCTCAATACAAGATGATGGA AGCAAGTGCTAACAACGGTGTTGACGAGAAGCAAAATGCAATGACTGCAGGCTTGATGTACACCACGGGTGACTGGCAGT ACAAATTGGGCTACGCGGCTAACTTTGAGCTAGAGCGTAACGGCAAAACAATCAACAACACAGATGACAACGTAATTTCT GCACAAGTTATGTACTTTGTTGACCCATCTGCAGTACTGTACGCTCGTGCTCGTACGCTAGACTTTGGTGACGGCGCAGA AGCACTTGATGGTTCAGGCGCTCGCTGGAAGTCAGCAGATTACACTGAATTCTCAGTGGGTGTTGAATACTACTTCTAA
Upstream 100 bases:
>100_bases CTGAGATATTTGCCCCGTCCAAACATGACTGGTGAGCTTGGTTCTATGTCCTAGGGAAGTAAGCAAGCCAAGGAAAACTA AAAAGATATAGGGGTTAAAC
Downstream 100 bases:
>100_bases CTCGTTAGAAATCAAGAAAGGGCGGCAACGCCCTTTCTTCGTTGATAAGTGGAACTGAAATATGAAAAAAATGATGATTC TGAGTGCGCTAGCACTATTT
Product: outer membrane protein
Products: NA
Alternate protein names: Chitoporin; Outer Membrane Porin Protein; Chitoporin ChiP
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MSYLKKSLLATAVTGLMFSGAAFAEGANSDAAKNYLTKDSFAYEVYGVIAMQAAYRDYDSGDAKTDDNLGGMQFNNESRI GFRGKKNFANFGPTFIWQIEGGYVDPSFGGEGAGLGERDTFVGFESESMGQVRVGRVLTPLYEVVDWPGSNPGLGDVYDW GGAIGGAKYQDRQSNTIRWDSPMYGEAFSLDVAAGAGDKAGLGEGDDFWAGLAAHYKIGPIQLDAAYEGNRNIVAEGQTW DNDTYLVGVQGWFENGISFFAQYKMMEASANNGVDEKQNAMTAGLMYTTGDWQYKLGYAANFELERNGKTINNTDDNVIS AQVMYFVDPSAVLYARARTLDFGDGAEALDGSGARWKSADYTEFSVGVEYYF
Sequences:
>Translated_372_residues MSYLKKSLLATAVTGLMFSGAAFAEGANSDAAKNYLTKDSFAYEVYGVIAMQAAYRDYDSGDAKTDDNLGGMQFNNESRI GFRGKKNFANFGPTFIWQIEGGYVDPSFGGEGAGLGERDTFVGFESESMGQVRVGRVLTPLYEVVDWPGSNPGLGDVYDW GGAIGGAKYQDRQSNTIRWDSPMYGEAFSLDVAAGAGDKAGLGEGDDFWAGLAAHYKIGPIQLDAAYEGNRNIVAEGQTW DNDTYLVGVQGWFENGISFFAQYKMMEASANNGVDEKQNAMTAGLMYTTGDWQYKLGYAANFELERNGKTINNTDDNVIS AQVMYFVDPSAVLYARARTLDFGDGAEALDGSGARWKSADYTEFSVGVEYYF >Mature_371_residues SYLKKSLLATAVTGLMFSGAAFAEGANSDAAKNYLTKDSFAYEVYGVIAMQAAYRDYDSGDAKTDDNLGGMQFNNESRIG FRGKKNFANFGPTFIWQIEGGYVDPSFGGEGAGLGERDTFVGFESESMGQVRVGRVLTPLYEVVDWPGSNPGLGDVYDWG GAIGGAKYQDRQSNTIRWDSPMYGEAFSLDVAAGAGDKAGLGEGDDFWAGLAAHYKIGPIQLDAAYEGNRNIVAEGQTWD NDTYLVGVQGWFENGISFFAQYKMMEASANNGVDEKQNAMTAGLMYTTGDWQYKLGYAANFELERNGKTINNTDDNVISA QVMYFVDPSAVLYARARTLDFGDGAEALDGSGARWKSADYTEFSVGVEYYF
Specific function: Unknown
COG id: COG3203
COG function: function code M; Outer membrane protein (porin)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40446; Mature: 40315
Theoretical pI: Translated: 4.11; Mature: 4.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYLKKSLLATAVTGLMFSGAAFAEGANSDAAKNYLTKDSFAYEVYGVIAMQAAYRDYDS CCHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC GDAKTDDNLGGMQFNNESRIGFRGKKNFANFGPTFIWQIEGGYVDPSFGGEGAGLGERDT CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCE FVGFESESMGQVRVGRVLTPLYEVVDWPGSNPGLGDVYDWGGAIGGAKYQDRQSNTIRWD EEEECCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEC SPMYGEAFSLDVAAGAGDKAGLGEGDDFWAGLAAHYKIGPIQLDAAYEGNRNIVAEGQTW CCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHEEEECCEEEEEEECCCCEEEECCCCC DNDTYLVGVQGWFENGISFFAQYKMMEASANNGVDEKQNAMTAGLMYTTGDWQYKLGYAA CCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEEEEEECCCEEEEEEEEE NFELERNGKTINNTDDNVISAQVMYFVDPSAVLYARARTLDFGDGAEALDGSGARWKSAD EEEECCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEECCCCCHHCCCCCCCCCCCC YTEFSVGVEYYF CEEEEEEEEEEC >Mature Secondary Structure SYLKKSLLATAVTGLMFSGAAFAEGANSDAAKNYLTKDSFAYEVYGVIAMQAAYRDYDS CHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC GDAKTDDNLGGMQFNNESRIGFRGKKNFANFGPTFIWQIEGGYVDPSFGGEGAGLGERDT CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCE FVGFESESMGQVRVGRVLTPLYEVVDWPGSNPGLGDVYDWGGAIGGAKYQDRQSNTIRWD EEEECCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEC SPMYGEAFSLDVAAGAGDKAGLGEGDDFWAGLAAHYKIGPIQLDAAYEGNRNIVAEGQTW CCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHEEEECCEEEEEEECCCCEEEECCCCC DNDTYLVGVQGWFENGISFFAQYKMMEASANNGVDEKQNAMTAGLMYTTGDWQYKLGYAA CCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEEEEEECCCEEEEEEEEE NFELERNGKTINNTDDNVISAQVMYFVDPSAVLYARARTLDFGDGAEALDGSGARWKSAD EEEECCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEECCCCCHHCCCCCCCCCCCC YTEFSVGVEYYF CEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA