| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is hemA
Identifier: 37679114
GI number: 37679114
Start: 930067
End: 931326
Strand: Direct
Name: hemA
Synonym: VV0930
Alternate gene names: 37679114
Gene position: 930067-931326 (Clockwise)
Preceding gene: 37679112
Following gene: 37679115
Centisome position: 27.73
GC content: 49.92
Gene sequence:
>1260_bases ATGTCTTTGCTTGCTATTGGCATAAATCACCACACCGCGTCGGTTGACTTGCGAGAGAAAGTGGCGTTTGGTCCAGACAA ACTGGCTAACGCACTGCAGCAGCTCAGCCAGCATGAAGCAGTCAATGGCAGCGTGATTCTCTCTACCTGTAACCGCACCG AAGTGTATTGCGATGTCAAATCGGGTGCACGCAGCAAGGTGATTGATTGGTTAAGCCAGTTTCATCAAATCGGTTTAGAA GAGCTCAAACCGAGTTTGTATGTGTACGAAGAACAAGCAGCAATTCGCCATCTGATGCGCGTTTCTTGCGGCTTGGATTC TTTGGTGCTGGGTGAACCACAAATATTAGGGCAGGTGAAACAGGCGTATTCCGACTCGCGTGAACAGCAGGCGGTGGATG CGTCTTTGGAAAAATTGTTTCAGAAAACCTTTTCCGTTGCTAAGCGCGTCCGCACTGAAACCGACATTGGCGGTAACGCC GTTTCGGTCGCGTATGCTGCTTGTACGTTAGCCAAACACATTTTTGAATCGTTAGAGAAATCGACGGTTCTATTGGTCGG TGCTGGTGAAACCATCGAGTTGGTGGCGAAGCACCTTCACGCGAACGGCTGTAGTAAAATGATTGTGGCAAACCGCACTC GCGAGCGTGCACTGACCTTAGCAGAGCAATTTGATGCTCAGGTGATCAGCTTGCAAGATATTCCCAATCACCTTGCCAAA GCGGACATAGTGATCAGCTCCACGGCGAGCCCGCTGCCGATCATAGGTAAAGGCATGGTGGAAACTGCGCTTAAGCAACG TCGTCATCAGCCTATGTTGTTGGTGGATATTGCAGTCCCGCGTGATGTGGAAGCGCAAGTGGGCGAATTGAATGATGCTT ACTTATATACTGTTGACGATCTGCAATCGATTATTGACAACAATATTGAGCAGCGCAAAGTCGAAGCGATCCAAGCAGAA GCGATCGTGGCGGAAGAAAGTGCCGCGTTTATGAGTTGGCTTCGCTCGCTCCAAGCGGTGGACAGTATTCGTGAGTATCG CCAGTCGGCCAATGACATTCGTGAGGAATTGCTCAGCAAAGCGCTGTTATCACTGGAAAGCGGTGGTGATCCAGAAAAAG TACTGCGCGAACTGAGTAATCGCCTGACAAATAAACTCATCCATGCACCCACACGTGCGCTACAATTGGCCGCAGAGCAG GGTGAGCCCGCAAAATTAACCGTCATTCGCCAAAGCTTAGGGCTGGATGAACTCAAATAA
Upstream 100 bases:
>100_bases GAAGTAAGGAAAACAAATCCGCTACACCCTTTTAATAAAGTCGTGCATAAAGTAAAATTCGCCTCCTAATTTTCCATTCT GTACAGAGAAAGCACTATCG
Downstream 100 bases:
>100_bases TTCTATCAATCAGTAAGATATATAAATGATGAAAGCCTCGATTCTAACCAAGCTAGAAATGCTGGTTGAGCGTTATGAAG AAGTGCAGCACCTTCTTGGT
Product: glutamyl-tRNA reductase
Products: NA
Alternate protein names: GluTR [H]
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MSLLAIGINHHTASVDLREKVAFGPDKLANALQQLSQHEAVNGSVILSTCNRTEVYCDVKSGARSKVIDWLSQFHQIGLE ELKPSLYVYEEQAAIRHLMRVSCGLDSLVLGEPQILGQVKQAYSDSREQQAVDASLEKLFQKTFSVAKRVRTETDIGGNA VSVAYAACTLAKHIFESLEKSTVLLVGAGETIELVAKHLHANGCSKMIVANRTRERALTLAEQFDAQVISLQDIPNHLAK ADIVISSTASPLPIIGKGMVETALKQRRHQPMLLVDIAVPRDVEAQVGELNDAYLYTVDDLQSIIDNNIEQRKVEAIQAE AIVAEESAAFMSWLRSLQAVDSIREYRQSANDIREELLSKALLSLESGGDPEKVLRELSNRLTNKLIHAPTRALQLAAEQ GEPAKLTVIRQSLGLDELK
Sequences:
>Translated_419_residues MSLLAIGINHHTASVDLREKVAFGPDKLANALQQLSQHEAVNGSVILSTCNRTEVYCDVKSGARSKVIDWLSQFHQIGLE ELKPSLYVYEEQAAIRHLMRVSCGLDSLVLGEPQILGQVKQAYSDSREQQAVDASLEKLFQKTFSVAKRVRTETDIGGNA VSVAYAACTLAKHIFESLEKSTVLLVGAGETIELVAKHLHANGCSKMIVANRTRERALTLAEQFDAQVISLQDIPNHLAK ADIVISSTASPLPIIGKGMVETALKQRRHQPMLLVDIAVPRDVEAQVGELNDAYLYTVDDLQSIIDNNIEQRKVEAIQAE AIVAEESAAFMSWLRSLQAVDSIREYRQSANDIREELLSKALLSLESGGDPEKVLRELSNRLTNKLIHAPTRALQLAAEQ GEPAKLTVIRQSLGLDELK >Mature_418_residues SLLAIGINHHTASVDLREKVAFGPDKLANALQQLSQHEAVNGSVILSTCNRTEVYCDVKSGARSKVIDWLSQFHQIGLEE LKPSLYVYEEQAAIRHLMRVSCGLDSLVLGEPQILGQVKQAYSDSREQQAVDASLEKLFQKTFSVAKRVRTETDIGGNAV SVAYAACTLAKHIFESLEKSTVLLVGAGETIELVAKHLHANGCSKMIVANRTRERALTLAEQFDAQVISLQDIPNHLAKA DIVISSTASPLPIIGKGMVETALKQRRHQPMLLVDIAVPRDVEAQVGELNDAYLYTVDDLQSIIDNNIEQRKVEAIQAEA IVAEESAAFMSWLRSLQAVDSIREYRQSANDIREELLSKALLSLESGGDPEKVLRELSNRLTNKLIHAPTRALQLAAEQG EPAKLTVIRQSLGLDELK
Specific function: Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA) [H]
COG id: COG0373
COG function: function code H; Glutamyl-tRNA reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glutamyl-tRNA reductase family [H]
Homologues:
Organism=Escherichia coli, GI1787461, Length=418, Percent_Identity=60.5263157894737, Blast_Score=500, Evalue=1e-143,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000343 - InterPro: IPR015896 - InterPro: IPR015895 - InterPro: IPR016040 - InterPro: IPR018214 - InterPro: IPR006151 [H]
Pfam domain/function: PF00745 GlutR_dimer; PF05201 GlutR_N; PF01488 Shikimate_DH [H]
EC number: =1.2.1.70 [H]
Molecular weight: Translated: 46055; Mature: 45924
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: PS00747 GLUTR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLAIGINHHTASVDLREKVAFGPDKLANALQQLSQHEAVNGSVILSTCNRTEVYCDVK CCEEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECC SGARSKVIDWLSQFHQIGLEELKPSLYVYEEQAAIRHLMRVSCGLDSLVLGEPQILGQVK CCCHHHHHHHHHHHHHCCHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHH QAYSDSREQQAVDASLEKLFQKTFSVAKRVRTETDIGGNAVSVAYAACTLAKHIFESLEK HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC STVLLVGAGETIELVAKHLHANGCSKMIVANRTRERALTLAEQFDAQVISLQDIPNHLAK CEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHCHHEEEHHHHHHHHHH ADIVISSTASPLPIIGKGMVETALKQRRHQPMLLVDIAVPRDVEAQVGELNDAYLYTVDD HCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCEEEEHHH LQSIIDNNIEQRKVEAIQAEAIVAEESAAFMSWLRSLQAVDSIREYRQSANDIREELLSK HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALLSLESGGDPEKVLRELSNRLTNKLIHAPTRALQLAAEQGEPAKLTVIRQSLGLDELK HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEHHHHHCCCCCCC >Mature Secondary Structure SLLAIGINHHTASVDLREKVAFGPDKLANALQQLSQHEAVNGSVILSTCNRTEVYCDVK CEEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECC SGARSKVIDWLSQFHQIGLEELKPSLYVYEEQAAIRHLMRVSCGLDSLVLGEPQILGQVK CCCHHHHHHHHHHHHHCCHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHH QAYSDSREQQAVDASLEKLFQKTFSVAKRVRTETDIGGNAVSVAYAACTLAKHIFESLEK HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC STVLLVGAGETIELVAKHLHANGCSKMIVANRTRERALTLAEQFDAQVISLQDIPNHLAK CEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHCHHEEEHHHHHHHHHH ADIVISSTASPLPIIGKGMVETALKQRRHQPMLLVDIAVPRDVEAQVGELNDAYLYTVDD HCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCEEEEHHH LQSIIDNNIEQRKVEAIQAEAIVAEESAAFMSWLRSLQAVDSIREYRQSANDIREELLSK HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALLSLESGGDPEKVLRELSNRLTNKLIHAPTRALQLAAEQGEPAKLTVIRQSLGLDELK HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA