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The map label for this gene is syd

Identifier: 37679072

GI number: 37679072

Start: 891052

End: 891597

Strand: Direct

Name: syd

Synonym: VV0888

Alternate gene names: 37679072

Gene position: 891052-891597 (Clockwise)

Preceding gene: 229047215

Following gene: 37679073

Centisome position: 26.56

GC content: 49.08

Gene sequence:

>546_bases
ATGTCATCTCCAGTTTCACTGGCACTTGCTGACTTTAGTCAACGTTTTCAAGCAGCGTGGCAAGCACAGCACAACGCATT
GCCTAGCAGTGAAGAGTTGGCGGATTTGCCTTCTCCTTGCGTGGTGGAGTCAAAAGGAGATGAAGTGCTCTGGCGCTCAG
TGAGCCTGTCTGCGCCTGTGGACTTCGCCAATGTTGAACAGGCGATTGAGTTGACACTGCATGACGACATCAAAGCCTTT
TATGGCAGCCAATTGAGTGCCGATATGACAGCCACGTGGGAGGGTAATGAGCTTACGCTGTTGCAAGTGTGGAATGACGA
TGATTTTACTCGCCTGCAGGAGAACATTTTGGGTCATTTAGTGACGCAACGACGTCTAAAACTCAAACCAACGGTGTTTA
TTGCCGCAACCGATGCTGAGTTAGATGTTCTGTCGATTTGCAATATCACGGGGAATGTTGTGCTTGAGCGATTGGGCACT
TCTCAGCGAGATGTTTTGGCGGAAAACGTCACCGAGTTTCTCACTAAACTCCAACCTATGGTGTAG

Upstream 100 bases:

>100_bases
CATACTTTGCGGTCATTTTCGATTAGAATGGCGGGAATTTTACTGAATCCATCGTTTAAAAGCCATCTTGTTGGCTCACA
AGGTATAGAAGGAGTTATTC

Downstream 100 bases:

>100_bases
CCGATGTACGTAGTTGAATTGCAGTTTGAGTGTTTCGACAACACCACCATCAGCGCGGTCGATAAAGCGATTAATGGCTT
AATGGATGCGTTGCGTTATA

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MSSPVSLALADFSQRFQAAWQAQHNALPSSEELADLPSPCVVESKGDEVLWRSVSLSAPVDFANVEQAIELTLHDDIKAF
YGSQLSADMTATWEGNELTLLQVWNDDDFTRLQENILGHLVTQRRLKLKPTVFIAATDAELDVLSICNITGNVVLERLGT
SQRDVLAENVTEFLTKLQPMV

Sequences:

>Translated_181_residues
MSSPVSLALADFSQRFQAAWQAQHNALPSSEELADLPSPCVVESKGDEVLWRSVSLSAPVDFANVEQAIELTLHDDIKAF
YGSQLSADMTATWEGNELTLLQVWNDDDFTRLQENILGHLVTQRRLKLKPTVFIAATDAELDVLSICNITGNVVLERLGT
SQRDVLAENVTEFLTKLQPMV
>Mature_180_residues
SSPVSLALADFSQRFQAAWQAQHNALPSSEELADLPSPCVVESKGDEVLWRSVSLSAPVDFANVEQAIELTLHDDIKAFY
GSQLSADMTATWEGNELTLLQVWNDDDFTRLQENILGHLVTQRRLKLKPTVFIAATDAELDVLSICNITGNVVLERLGTS
QRDVLAENVTEFLTKLQPMV

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the cytoplasmic side of the inner membrane, probably via secY (By similarity)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family

Homologues:

Organism=Escherichia coli, GI1789157, Length=174, Percent_Identity=45.4022988505747, Blast_Score=174, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SYDP_VIBVU (Q8DFB9)

Other databases:

- EMBL:   AE016795
- RefSeq:   NP_759302.1
- GeneID:   1177261
- GenomeReviews:   AE016795_GR
- KEGG:   vvu:VV1_0296
- HOGENOM:   HBG298615
- OMA:   FANVEHA
- ProtClustDB:   PRK04968
- BioCyc:   VVUL216895:VV1_0296-MONOMER
- HAMAP:   MF_01104
- InterPro:   IPR009948

Pfam domain/function: PF07348 Syd

EC number: NA

Molecular weight: Translated: 20043; Mature: 19912

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPVSLALADFSQRFQAAWQAQHNALPSSEELADLPSPCVVESKGDEVLWRSVSLSAPV
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEECCCCEEEEEEEECCCCC
DFANVEQAIELTLHDDIKAFYGSQLSADMTATWEGNELTLLQVWNDDDFTRLQENILGHL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEEECCCHHHHHHHHHHHHH
VTQRRLKLKPTVFIAATDAELDVLSICNITGNVVLERLGTSQRDVLAENVTEFLTKLQPM
HHHHHEECCCEEEEEECCCCCCCHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
V
C
>Mature Secondary Structure 
SSPVSLALADFSQRFQAAWQAQHNALPSSEELADLPSPCVVESKGDEVLWRSVSLSAPV
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEECCCCEEEEEEEECCCCC
DFANVEQAIELTLHDDIKAFYGSQLSADMTATWEGNELTLLQVWNDDDFTRLQENILGHL
CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEEECCCHHHHHHHHHHHHH
VTQRRLKLKPTVFIAATDAELDVLSICNITGNVVLERLGTSQRDVLAENVTEFLTKLQPM
HHHHHEECCCEEEEEECCCCCCCHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA