| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is tyrA
Identifier: 37678886
GI number: 37678886
Start: 700385
End: 701512
Strand: Direct
Name: tyrA
Synonym: VV0702
Alternate gene names: 37678886
Gene position: 700385-701512 (Clockwise)
Preceding gene: 229047216
Following gene: 37678890
Centisome position: 20.88
GC content: 48.85
Gene sequence:
>1128_bases ATGGCAGTTGAACTGAACGCATTGCGTGAACAGATTGATGCAGTAGACAAACAGATGTTGGCGCTATTGGCTCAGCGCTT GGCATTGGTAGAGCAAGTTGGCCATGTGAAAAGCCAACATGGCTTACCGATTTATGCACCCGATAGAGAAGCGGCGATGC TGGCCTCTCGTCGTGCAGAAGCCGAAAAAATCGGCGTACCTCCACAGCTCATTGAGGACATTTTGCGCCGAACCATGCGT GAATCTTATGCCAGTGAGAAAGATTCTGGGTTTAAATGTCTCAATCCGGACTTGCGTTCTGTGGTGATCATTGGTGGTCA TGGCCAGTTGGGTGGTCTGTTTGCTCGCATGTTTACCCTCTCGGGTTACCAGGTCAAAATCTTAGGCAGTAAGGATTGGC ACCGCGCTGATGAGATATTGGATGGGGCAGGATTGGTGGTGGTTACCGTGCCGATTCATTTAACCCAAGGGGTGATTGAA AAGCTGACCCAACTGCCATCGGATTGCATTTTGTGTGACCTCACTTCGATCAAGTCGAAGCCGCTGAAAACCATGCTCGA TGTGCACTCTGGGCCGGTTGTTGGTTTGCACCCTATGTTTGGTCCCGATGTGCCGAGTTTAGCCAAGCAAGTGATTGTCT ACTGTGATGGTCGAGGTGCTGAGCAATATCAGTGGTTACTGCAGCAGTTTAAGATTTGGGGGGCAAGCTTGTGCCAAATT GAGGCCAGCGAACACGACCACGGCATGACGTTAATTCAAGCATTAAGGCACTTTACTTCCTTTGCCTATGGCATGCATTT GAGTCAGGAAAATCCAAGTCTCGATAAACTGCTGAAACTGAGCTCGCCCATTTACCGTCTTGAGTTAGCGATGGTAGGGC GTCTGTTTGCCCAAGACCCAAACTTGTATGGCGACATTATTCTTTCGTCGCAAGAGAACATCGACATGATCAAGCGTTTC CATCGCCGCTTTGGCGAGGCACTAGAGATGTTAGATCAGCACGATAAAGCGCGTTTTGTTGAACGTTTCACGCAAGTGAG TGATTGGTTTGGGGGGTATTCGCAGCAGTTTATGGCGGAAAGCCAAAACTTACTCAAACAAGCGAATGACAACTTGCATC GTGATTAA
Upstream 100 bases:
>100_bases ATCAATTGGCAGGCAACTGAGGCACTATTGCGTAAAGCACACAAAGAGTTAGTGCCACATTTAGAAAACCGTCTCAAATA AGGATAGAGCAAGGTAAATC
Downstream 100 bases:
>100_bases CATTTAAGCGTATTAGAAATAGAAAGAGCAGCCTGATGCTGCTCTTTCTATTTTCGGCTTACCCATTGCATTAGTTGGTT TGCAAGCTTGGGTCGAGGCT
Product: bifunctional chorismate mutase/prephenate dehydrogenase
Products: NA
Alternate protein names: Chorismate mutase; CM; Prephenate dehydrogenase; PDH [H]
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MAVELNALREQIDAVDKQMLALLAQRLALVEQVGHVKSQHGLPIYAPDREAAMLASRRAEAEKIGVPPQLIEDILRRTMR ESYASEKDSGFKCLNPDLRSVVIIGGHGQLGGLFARMFTLSGYQVKILGSKDWHRADEILDGAGLVVVTVPIHLTQGVIE KLTQLPSDCILCDLTSIKSKPLKTMLDVHSGPVVGLHPMFGPDVPSLAKQVIVYCDGRGAEQYQWLLQQFKIWGASLCQI EASEHDHGMTLIQALRHFTSFAYGMHLSQENPSLDKLLKLSSPIYRLELAMVGRLFAQDPNLYGDIILSSQENIDMIKRF HRRFGEALEMLDQHDKARFVERFTQVSDWFGGYSQQFMAESQNLLKQANDNLHRD
Sequences:
>Translated_375_residues MAVELNALREQIDAVDKQMLALLAQRLALVEQVGHVKSQHGLPIYAPDREAAMLASRRAEAEKIGVPPQLIEDILRRTMR ESYASEKDSGFKCLNPDLRSVVIIGGHGQLGGLFARMFTLSGYQVKILGSKDWHRADEILDGAGLVVVTVPIHLTQGVIE KLTQLPSDCILCDLTSIKSKPLKTMLDVHSGPVVGLHPMFGPDVPSLAKQVIVYCDGRGAEQYQWLLQQFKIWGASLCQI EASEHDHGMTLIQALRHFTSFAYGMHLSQENPSLDKLLKLSSPIYRLELAMVGRLFAQDPNLYGDIILSSQENIDMIKRF HRRFGEALEMLDQHDKARFVERFTQVSDWFGGYSQQFMAESQNLLKQANDNLHRD >Mature_374_residues AVELNALREQIDAVDKQMLALLAQRLALVEQVGHVKSQHGLPIYAPDREAAMLASRRAEAEKIGVPPQLIEDILRRTMRE SYASEKDSGFKCLNPDLRSVVIIGGHGQLGGLFARMFTLSGYQVKILGSKDWHRADEILDGAGLVVVTVPIHLTQGVIEK LTQLPSDCILCDLTSIKSKPLKTMLDVHSGPVVGLHPMFGPDVPSLAKQVIVYCDGRGAEQYQWLLQQFKIWGASLCQIE ASEHDHGMTLIQALRHFTSFAYGMHLSQENPSLDKLLKLSSPIYRLELAMVGRLFAQDPNLYGDIILSSQENIDMIKRFH RRFGEALEMLDQHDKARFVERFTQVSDWFGGYSQQFMAESQNLLKQANDNLHRD
Specific function: Tyrosine biosynthesis [C]
COG id: COG0287
COG function: function code E; Prephenate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 prephenate/arogenate dehydrogenase domain [H]
Homologues:
Organism=Escherichia coli, GI1788952, Length=371, Percent_Identity=64.6900269541779, Blast_Score=511, Evalue=1e-146,
Paralogues:
None
Copy number: 500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR008244 - InterPro: IPR002701 - InterPro: IPR020822 - InterPro: IPR011277 - InterPro: IPR016040 - InterPro: IPR003099 [H]
Pfam domain/function: PF01817 CM_2; PF02153 PDH [H]
EC number: =5.4.99.5; =1.3.1.12 [H]
Molecular weight: Translated: 42115; Mature: 41984
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVELNALREQIDAVDKQMLALLAQRLALVEQVGHVKSQHGLPIYAPDREAAMLASRRAE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHH AEKIGVPPQLIEDILRRTMRESYASEKDSGFKCLNPDLRSVVIIGGHGQLGGLFARMFTL HHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEECCCCCHHHHHHHHHHC SGYQVKILGSKDWHRADEILDGAGLVVVTVPIHLTQGVIEKLTQLPSDCILCDLTSIKSK CCCEEEEECCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCHHEEEEHHHHCCC PLKTMLDVHSGPVVGLHPMFGPDVPSLAKQVIVYCDGRGAEQYQWLLQQFKIWGASLCQI HHHHHHHHCCCCEEEECCCCCCCHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCHHEEE EASEHDHGMTLIQALRHFTSFAYGMHLSQENPSLDKLLKLSSPIYRLELAMVGRLFAQDP ECCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC NLYGDIILSSQENIDMIKRFHRRFGEALEMLDQHDKARFVERFTQVSDWFGGYSQQFMAE CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH SQNLLKQANDNLHRD HHHHHHHHCCCCCCC >Mature Secondary Structure AVELNALREQIDAVDKQMLALLAQRLALVEQVGHVKSQHGLPIYAPDREAAMLASRRAE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHH AEKIGVPPQLIEDILRRTMRESYASEKDSGFKCLNPDLRSVVIIGGHGQLGGLFARMFTL HHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEECCCCCHHHHHHHHHHC SGYQVKILGSKDWHRADEILDGAGLVVVTVPIHLTQGVIEKLTQLPSDCILCDLTSIKSK CCCEEEEECCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCHHEEEEHHHHCCC PLKTMLDVHSGPVVGLHPMFGPDVPSLAKQVIVYCDGRGAEQYQWLLQQFKIWGASLCQI HHHHHHHHCCCCEEEECCCCCCCHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCHHEEE EASEHDHGMTLIQALRHFTSFAYGMHLSQENPSLDKLLKLSSPIYRLELAMVGRLFAQDP ECCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC NLYGDIILSSQENIDMIKRFHRRFGEALEMLDQHDKARFVERFTQVSDWFGGYSQQFMAE CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH SQNLLKQANDNLHRD HHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6396419; 9205837; 9278503 [H]