| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is nagZ [H]
Identifier: 37678884
GI number: 37678884
Start: 698115
End: 699101
Strand: Direct
Name: nagZ [H]
Synonym: VV0700
Alternate gene names: 37678884
Gene position: 698115-699101 (Clockwise)
Preceding gene: 37678883
Following gene: 229047216
Centisome position: 20.81
GC content: 50.35
Gene sequence:
>987_bases ATGGGGCCACTTTGGGTTGATGTCGCAGGTTATGAACTGAATGCAGAAGACAAAGAAATTTTACAGCATCCATCCGTTGG CGGATTGATCTTATTTACCCGCAACTATCACGATAGTGAACAGCTGTTGGCGCTCACTGCGGCCATTCGCCAAGTGGTCA AGCGTCCTTTTCTGATTGGCGTCGACCAAGAGGGAGGGCGAGTTCAGCGTTTCCGTGATGGTTTTTCTCTGATTCCCGCC GCGGCAGAATATGCCAAACAAGCCAATGGGGAAGCGATGGCACAAATGGGCGGTTGGCTGATGGCGGCCGAACTGATTGC TCATGATATCGACCTGAGTTTTGCCCCCGTGTTAGACCAAGGCTTTGGATGTAAAGCGATTGGCAACCGAGCGTTTGGTG AAGATACGCAGACTATTTTGCGCCATAGCAGTGCCTACATGCAGGGCATGAAAGCGGTGGGGATGGCAACAACGGGCAAA CACTTCCCTGGTCATGGCGGCGTGGTGGCAGATTCGCATCTTGAAACCCCGTTTGACCAACGAAGCGATATTGTTGAGCA GGATATGGCAATCTTCAAAACGCAAATAGACGCAGGCTTATTAGACGCCATGATGCCTGCGCATGTGATTTACCCGCATT ACGATCCTCAACCAGCGAGTGGTTCAGAATATTGGTTAAAACAGGTATTACGCCAGCAATTGGGTTTCAAGGGCTTAATT TTTTCTGATGATCTCACCATGGAAGGGGCTGCCGTGATGGGAGGCCCTGCAGATAGGGCTTTACAAGCATTGAATGCGGG CTGTGACATGCTTTTGATGTGCAATAAACGCGATGCACAAGTGGCAGCCTTGGACGCACTGCCTATCGTCGAGGTTCCCT TGGCATTATCCTTGTTGAAGAAACGCAGCTTCAGCCTTTCTGAACTGAAATTGGCGCCGCAATGGAAAGAAGCAAGAGAA AACATGCTACGCATACTGGGCCACTAA
Upstream 100 bases:
>100_bases TCAATTCCATTGTGTTTTCATCATGCAAACCATTGTAATGCAAATTCATTCGGAATAACCTCGATGAGTTTGAGATATTC CGTCTATTTTGGAGAGAAAA
Downstream 100 bases:
>100_bases AACTTAACAAAAGACGAACTTGAAAACCAAAGCGAGGCGCTTTGGTTTTTTTATAATGTGTAATTTATTTTTTACATTTG ATGTTTTTTATTGTTTACGG
Product: beta-hexosaminidase
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MGPLWVDVAGYELNAEDKEILQHPSVGGLILFTRNYHDSEQLLALTAAIRQVVKRPFLIGVDQEGGRVQRFRDGFSLIPA AAEYAKQANGEAMAQMGGWLMAAELIAHDIDLSFAPVLDQGFGCKAIGNRAFGEDTQTILRHSSAYMQGMKAVGMATTGK HFPGHGGVVADSHLETPFDQRSDIVEQDMAIFKTQIDAGLLDAMMPAHVIYPHYDPQPASGSEYWLKQVLRQQLGFKGLI FSDDLTMEGAAVMGGPADRALQALNAGCDMLLMCNKRDAQVAALDALPIVEVPLALSLLKKRSFSLSELKLAPQWKEARE NMLRILGH
Sequences:
>Translated_328_residues MGPLWVDVAGYELNAEDKEILQHPSVGGLILFTRNYHDSEQLLALTAAIRQVVKRPFLIGVDQEGGRVQRFRDGFSLIPA AAEYAKQANGEAMAQMGGWLMAAELIAHDIDLSFAPVLDQGFGCKAIGNRAFGEDTQTILRHSSAYMQGMKAVGMATTGK HFPGHGGVVADSHLETPFDQRSDIVEQDMAIFKTQIDAGLLDAMMPAHVIYPHYDPQPASGSEYWLKQVLRQQLGFKGLI FSDDLTMEGAAVMGGPADRALQALNAGCDMLLMCNKRDAQVAALDALPIVEVPLALSLLKKRSFSLSELKLAPQWKEARE NMLRILGH >Mature_327_residues GPLWVDVAGYELNAEDKEILQHPSVGGLILFTRNYHDSEQLLALTAAIRQVVKRPFLIGVDQEGGRVQRFRDGFSLIPAA AEYAKQANGEAMAQMGGWLMAAELIAHDIDLSFAPVLDQGFGCKAIGNRAFGEDTQTILRHSSAYMQGMKAVGMATTGKH FPGHGGVVADSHLETPFDQRSDIVEQDMAIFKTQIDAGLLDAMMPAHVIYPHYDPQPASGSEYWLKQVLRQQLGFKGLIF SDDLTMEGAAVMGGPADRALQALNAGCDMLLMCNKRDAQVAALDALPIVEVPLALSLLKKRSFSLSELKLAPQWKEAREN MLRILGH
Specific function: Cleaves GlcNAc linked beta-1,4 to MurNAc tripeptides [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family. NagZ subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787350, Length=321, Percent_Identity=55.4517133956386, Blast_Score=355, Evalue=2e-99,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022956 - InterPro: IPR019800 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3 [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 35816; Mature: 35684
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPLWVDVAGYELNAEDKEILQHPSVGGLILFTRNYHDSEQLLALTAAIRQVVKRPFLIG CCCEEEEEECCEECCCHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEE VDQEGGRVQRFRDGFSLIPAAAEYAKQANGEAMAQMGGWLMAAELIAHDIDLSFAPVLDQ ECCCCCHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC GFGCKAIGNRAFGEDTQTILRHSSAYMQGMKAVGMATTGKHFPGHGGVVADSHLETPFDQ CCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCHH RSDIVEQDMAIFKTQIDAGLLDAMMPAHVIYPHYDPQPASGSEYWLKQVLRQQLGFKGLI HHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEE FSDDLTMEGAAVMGGPADRALQALNAGCDMLLMCNKRDAQVAALDALPIVEVPLALSLLK EECCCCCCCCEEECCCHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHH KRSFSLSELKLAPQWKEARENMLRILGH HCCCCHHHHCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure GPLWVDVAGYELNAEDKEILQHPSVGGLILFTRNYHDSEQLLALTAAIRQVVKRPFLIG CCEEEEEECCEECCCHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEE VDQEGGRVQRFRDGFSLIPAAAEYAKQANGEAMAQMGGWLMAAELIAHDIDLSFAPVLDQ ECCCCCHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC GFGCKAIGNRAFGEDTQTILRHSSAYMQGMKAVGMATTGKHFPGHGGVVADSHLETPFDQ CCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCHH RSDIVEQDMAIFKTQIDAGLLDAMMPAHVIYPHYDPQPASGSEYWLKQVLRQQLGFKGLI HHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEE FSDDLTMEGAAVMGGPADRALQALNAGCDMLLMCNKRDAQVAALDALPIVEVPLALSLLK EECCCCCCCCEEECCCHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHH KRSFSLSELKLAPQWKEARENMLRILGH HCCCCHHHHCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA