| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is secA
Identifier: 37678805
GI number: 37678805
Start: 607369
End: 610092
Strand: Direct
Name: secA
Synonym: VV0621
Alternate gene names: 37678805
Gene position: 607369-610092 (Clockwise)
Preceding gene: 37678803
Following gene: 37678806
Centisome position: 18.11
GC content: 46.26
Gene sequence:
>2724_bases ATGATAACTAAGCTACTGACAAAGGTGATTGGTAGTCGCAACGATCGCACACTGCGCCGCCTTAGAAAGATTGTTAAAGA GATTAACAACTACGAGCCGACCTTTGAGGCTCTCTCAGATGAACAATTAAAAGCAAAAACGGTTGAGTTTCGCCAACGTC TAGAACAAGGCGAAACGCTTGACCAACTATTACCTGAAGCATTTGCTACCGTTCGTGAAGCATCAAAGCGTGTTTACGGT ATGCGTCATTTCGATGTTCAGTTGATCGGTGGTATGGTTCTCAATGCAGGCCAAATCGCTGAAATGCGTACGGGTGAAGG TAAAACTTTAACCGCAACTCTTCCTGCTTACCTTAACGCACTGGCTGGTAAAGGTGTTCACATTGTTACCGTCAATGATT ACTTGGCAAAGCGTGACGCAGAAACCAACCGCCCTCTATTTGAGTTTCTAGGAATGACCGTTGGCATTAATGTGCCAAAC ATGCCTCATCCTGCGAAAAAAGAAGCGTACCAAGCCGATATCCTATACGGGACCAACAACGAGTTTGGTTTTGATTACCT ACGCGATAACATGGCTTTCCGCAATGAAGATCGCGTTCAGCGTGAGCGTTTCTTTGCCGTCGTCGATGAGGTGGACTCGA TCTTGATCGATGAAGCGCGTACACCACTTATCATTTCTGGTCCTGCTGAAGACAGCTCTGAGCTTTACACGCGTATCAAT GCGCTGATTCCATTATTGCAGAAGCAAGATAAAGAAGACTCTGAAGAGTATCGTGGTGATGGCCACTACACTGTCGACGA AAAATCGAAGCAAGTGCATCTAACGGAAACAGGCCAAGAGTTTGTGGAAGAGTTGATGGTGAAAAATGGCCTAATGGAAG AGGGAGATACATTGTACTCTCCAACCAACATCAGCCTTCTGCATCACGTTAACGCGGCATTACGTGCGCATGTCCTGTTT GAGAAGAACGTAGACTACATCGTAAACGAAGACGGTGAAGTGGTGATCGTTGACGAACACACTGGCCGTACTATGCCGGG TCGTCGTTGGTCTGAAGGTCTTCACCAAGCGGTTGAAGCGAAAGAAGGCGTTAAGATTCAAAACGAAAACCAGACCTTGG CTTCGATTACATTCCAGAACTACTTCCGTTTGTATGAAAAACTGTCTGGTATGACGGGTACAGCGGACACCGAAGCGTTC GAATTCCAATCGATTTACGGTCTTGAGACAGTGGTTATCCCAACCAACAAGCCAATGATCCGTAACGACATGCCAGATGT TGTTTATCGTACTGAAGCAGAGAAATTTGCTGCCATTATTGAAGACATCAAAGCGCGTGTAGAAAAAGGTCAACCTGTTC TGGTGGGTACGGTTTCTATCGAAAAATCCGAGCTGCTTTCGAATGCACTGAAGAAAGCGAAAATTAAACACAATGTTCTA AATGCCAAGTTCCACGAAAAAGAAGCGGAAATTGTTGCAGAAGCCGGTAAACCGGGTGCGGTGACCATTGCAACCAACAT GGCTGGTCGTGGTACGGACATCGTGCTAGGCGGTAGTTGGCAAGCGAAAGTTGAATCGATGGCTAACCCAACGCAAGAAC AGATTGATGAAATCAAAGCTGAGTGGAAGCTGGTTCACGATCAAGTGCTTGAGTCGGGCGGTCTACACATTATTGGTACA GAGCGTCACGAATCTCGCCGTATCGATAACCAGTTGCGCGGTCGCTCAGGTCGTCAGGGTGATGCCGGTTCATCTCGTTT CTACCTTTCTATGGAAGATTCACTACTCCGTATCTTTACTTCGGATCGCATGGCGGCATTGATTCAAAGTGGCATGGAAG AAGGAGAAGCGATCGAATCTAAGATGCTTTCTCGCTCTATCGAAAAAGCGCAACGCAAAGTGGAAGGTCGTAACTTCGAT ATTCGTAAGCAGCTACTTGAGTACGATGATGTGGCGAACGATCAGCGTAAAGTCGTGTATGAGCTACGTGATGAGTTGAT GAGTGTTGATGACATTAGCGATATGATCGAACACAATCGCGTTGATGTGCTTCAAGGTGTCATCGATGAATACATTCCAC CTCAATCACTGGAAGACATGTGGGATCTTGAAGGCCTACAAGAACGTCTAAAGAACGATTTCGATATCGATGCTCCTGTG AAGCAATGGTTGGAAGAAGATGACAAGCTTTACGAAGAAGCACTACGTGAAAAAGTCATTGATACCGCGGTTGAAGTCTA CAAAGCGAAAGAAGAAGTGGTTGGTGCACAAGTGCTACGTAACTTCGAAAAATCAGTGATGTTACAAACGTTGGATACAT TGTGGAAAGAGCACTTGGCGGCGATGGATCACTTACGTCAAGGTATCCATCTGCGTGGTTATGCACAAAAGAACCCGAAA CAGGAATACAAGCGTGAGTCGTTTGAACTGTTTGAAGGCTTGCTTGAAACATTGAAATCTGATGTTGTGATGATTTTGTC AAAAGTTCGTGTGCAGCAGCAAGAAGAAGTGGAGCGTATGGAAGCTCAGCGTCGTGCTCAAGCTGAAGAAGCCGCTCGCC GTGCACAAGCTCAACATGCCTCAGCTCAAAGCCAGCTTGCTGATGATTCTGACGAAGGGCATCACCAGCCAGTGGTCCGT GACGAGCGTAAAGTAGGTCGTAATGAACCTTGCCCTTGTGGTAGTGGCAAAAAATACAAACAGTGTCACGGTCAAATCAA TTAG
Upstream 100 bases:
>100_bases AGTTACATGATTTATCTCAGTATCCTTAGTTTAAAACTGGTAGAGACTGAAGGCATTTATCGTAGGCCGAAATGGTCTAA CAAAGAGAGATTCATAAGAA
Downstream 100 bases:
>100_bases TGTTAGCCTAATTAATGTAATCAATTAAGAGTCGCTTAGGCGGCTCTTTTTTTAAGGAAAAAATGATGAAACGTATCCAT ATTGTTGCGGCGATTATTTT
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 907; Mature: 907
Protein sequence:
>907_residues MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPTFEALSDEQLKAKTVEFRQRLEQGETLDQLLPEAFATVREASKRVYG MRHFDVQLIGGMVLNAGQIAEMRTGEGKTLTATLPAYLNALAGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGINVPN MPHPAKKEAYQADILYGTNNEFGFDYLRDNMAFRNEDRVQRERFFAVVDEVDSILIDEARTPLIISGPAEDSSELYTRIN ALIPLLQKQDKEDSEEYRGDGHYTVDEKSKQVHLTETGQEFVEELMVKNGLMEEGDTLYSPTNISLLHHVNAALRAHVLF EKNVDYIVNEDGEVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAF EFQSIYGLETVVIPTNKPMIRNDMPDVVYRTEAEKFAAIIEDIKARVEKGQPVLVGTVSIEKSELLSNALKKAKIKHNVL NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVESMANPTQEQIDEIKAEWKLVHDQVLESGGLHIIGT ERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLLRIFTSDRMAALIQSGMEEGEAIESKMLSRSIEKAQRKVEGRNFD IRKQLLEYDDVANDQRKVVYELRDELMSVDDISDMIEHNRVDVLQGVIDEYIPPQSLEDMWDLEGLQERLKNDFDIDAPV KQWLEEDDKLYEEALREKVIDTAVEVYKAKEEVVGAQVLRNFEKSVMLQTLDTLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFEGLLETLKSDVVMILSKVRVQQQEEVERMEAQRRAQAEEAARRAQAQHASAQSQLADDSDEGHHQPVVR DERKVGRNEPCPCGSGKKYKQCHGQIN
Sequences:
>Translated_907_residues MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPTFEALSDEQLKAKTVEFRQRLEQGETLDQLLPEAFATVREASKRVYG MRHFDVQLIGGMVLNAGQIAEMRTGEGKTLTATLPAYLNALAGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGINVPN MPHPAKKEAYQADILYGTNNEFGFDYLRDNMAFRNEDRVQRERFFAVVDEVDSILIDEARTPLIISGPAEDSSELYTRIN ALIPLLQKQDKEDSEEYRGDGHYTVDEKSKQVHLTETGQEFVEELMVKNGLMEEGDTLYSPTNISLLHHVNAALRAHVLF EKNVDYIVNEDGEVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAF EFQSIYGLETVVIPTNKPMIRNDMPDVVYRTEAEKFAAIIEDIKARVEKGQPVLVGTVSIEKSELLSNALKKAKIKHNVL NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVESMANPTQEQIDEIKAEWKLVHDQVLESGGLHIIGT ERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLLRIFTSDRMAALIQSGMEEGEAIESKMLSRSIEKAQRKVEGRNFD IRKQLLEYDDVANDQRKVVYELRDELMSVDDISDMIEHNRVDVLQGVIDEYIPPQSLEDMWDLEGLQERLKNDFDIDAPV KQWLEEDDKLYEEALREKVIDTAVEVYKAKEEVVGAQVLRNFEKSVMLQTLDTLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFEGLLETLKSDVVMILSKVRVQQQEEVERMEAQRRAQAEEAARRAQAQHASAQSQLADDSDEGHHQPVVR DERKVGRNEPCPCGSGKKYKQCHGQIN >Mature_907_residues MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPTFEALSDEQLKAKTVEFRQRLEQGETLDQLLPEAFATVREASKRVYG MRHFDVQLIGGMVLNAGQIAEMRTGEGKTLTATLPAYLNALAGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGINVPN MPHPAKKEAYQADILYGTNNEFGFDYLRDNMAFRNEDRVQRERFFAVVDEVDSILIDEARTPLIISGPAEDSSELYTRIN ALIPLLQKQDKEDSEEYRGDGHYTVDEKSKQVHLTETGQEFVEELMVKNGLMEEGDTLYSPTNISLLHHVNAALRAHVLF EKNVDYIVNEDGEVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAF EFQSIYGLETVVIPTNKPMIRNDMPDVVYRTEAEKFAAIIEDIKARVEKGQPVLVGTVSIEKSELLSNALKKAKIKHNVL NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVESMANPTQEQIDEIKAEWKLVHDQVLESGGLHIIGT ERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLLRIFTSDRMAALIQSGMEEGEAIESKMLSRSIEKAQRKVEGRNFD IRKQLLEYDDVANDQRKVVYELRDELMSVDDISDMIEHNRVDVLQGVIDEYIPPQSLEDMWDLEGLQERLKNDFDIDAPV KQWLEEDDKLYEEALREKVIDTAVEVYKAKEEVVGAQVLRNFEKSVMLQTLDTLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFEGLLETLKSDVVMILSKVRVQQQEEVERMEAQRRAQAEEAARRAQAQHASAQSQLADDSDEGHHQPVVR DERKVGRNEPCPCGSGKKYKQCHGQIN
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the pr
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family [H]
Homologues:
Organism=Escherichia coli, GI1786287, Length=907, Percent_Identity=72.3263506063947, Blast_Score=1375, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 [H]
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW [H]
EC number: NA
Molecular weight: Translated: 103079; Mature: 103079
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS01312 SECA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPTFEALSDEQLKAKTVEFRQRLEQGETL CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCHH DQLLPEAFATVREASKRVYGMRHFDVQLIGGMVLNAGQIAEMRTGEGKTLTATLPAYLNA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEHHHHHHH LAGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGINVPNMPHPAKKEAYQADILYGTNN HCCCCEEEEEECHHHHHCCCCCCCHHHHHHCCCEECCCCCCCCCCHHHHHEEEEEEECCC EFGFDYLRDNMAFRNEDRVQRERFFAVVDEVDSILIDEARTPLIISGPAEDSSELYTRIN CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH ALIPLLQKQDKEDSEEYRGDGHYTVDEKSKQVHLTETGQEFVEELMVKNGLMEEGDTLYS HHHHHHHHCCCCHHHHHCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCEEC PTNISLLHHVNAALRAHVLFEKNVDYIVNEDGEVVIVDEHTGRTMPGRRWSEGLHQAVEA CCCHHHHHHHHHHHHHHHHEECCCCEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH KEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAFEFQSIYGLETVVIPTNKPMI HCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCH RNDMPDVVYRTEAEKFAAIIEDIKARVEKGQPVLVGTVSIEKSELLSNALKKAKIKHNVL HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVESMANPTQEQIDEIKA CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHH EWKLVHDQVLESGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLLRIFT HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHH SDRMAALIQSGMEEGEAIESKMLSRSIEKAQRKVEGRNFDIRKQLLEYDDVANDQRKVVY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHH ELRDELMSVDDISDMIEHNRVDVLQGVIDEYIPPQSLEDMWDLEGLQERLKNDFDIDAPV HHHHHHHCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH KQWLEEDDKLYEEALREKVIDTAVEVYKAKEEVVGAQVLRNFEKSVMLQTLDTLWKEHLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMDHLRQGIHLRGYAQKNPKQEYKRESFELFEGLLETLKSDVVMILSKVRVQQQEEVERM HHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAQRRAQAEEAARRAQAQHASAQSQLADDSDEGHHQPVVRDERKVGRNEPCPCGSGKKYK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHH QCHGQIN HHCCCCC >Mature Secondary Structure MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPTFEALSDEQLKAKTVEFRQRLEQGETL CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCHH DQLLPEAFATVREASKRVYGMRHFDVQLIGGMVLNAGQIAEMRTGEGKTLTATLPAYLNA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEHHHHHHH LAGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGINVPNMPHPAKKEAYQADILYGTNN HCCCCEEEEEECHHHHHCCCCCCCHHHHHHCCCEECCCCCCCCCCHHHHHEEEEEEECCC EFGFDYLRDNMAFRNEDRVQRERFFAVVDEVDSILIDEARTPLIISGPAEDSSELYTRIN CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH ALIPLLQKQDKEDSEEYRGDGHYTVDEKSKQVHLTETGQEFVEELMVKNGLMEEGDTLYS HHHHHHHHCCCCHHHHHCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCEEC PTNISLLHHVNAALRAHVLFEKNVDYIVNEDGEVVIVDEHTGRTMPGRRWSEGLHQAVEA CCCHHHHHHHHHHHHHHHHEECCCCEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH KEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAFEFQSIYGLETVVIPTNKPMI HCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCH RNDMPDVVYRTEAEKFAAIIEDIKARVEKGQPVLVGTVSIEKSELLSNALKKAKIKHNVL HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVESMANPTQEQIDEIKA CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHH EWKLVHDQVLESGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDSLLRIFT HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHH SDRMAALIQSGMEEGEAIESKMLSRSIEKAQRKVEGRNFDIRKQLLEYDDVANDQRKVVY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHH ELRDELMSVDDISDMIEHNRVDVLQGVIDEYIPPQSLEDMWDLEGLQERLKNDFDIDAPV HHHHHHHCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH KQWLEEDDKLYEEALREKVIDTAVEVYKAKEEVVGAQVLRNFEKSVMLQTLDTLWKEHLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMDHLRQGIHLRGYAQKNPKQEYKRESFELFEGLLETLKSDVVMILSKVRVQQQEEVERM HHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAQRRAQAEEAARRAQAQHASAQSQLADDSDEGHHQPVVRDERKVGRNEPCPCGSGKKYK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHH QCHGQIN HHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA