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The map label for this gene is ytfM [H]

Identifier: 37678612

GI number: 37678612

Start: 417285

End: 419000

Strand: Direct

Name: ytfM [H]

Synonym: VV0428

Alternate gene names: 37678612

Gene position: 417285-419000 (Clockwise)

Preceding gene: 37678610

Following gene: 37678613

Centisome position: 12.44

GC content: 49.94

Gene sequence:

>1716_bases
ATGATAAAAAAAGTATTACCACTATTAGTCAGCTCGCTTTTTGCCAGCAATCTTGTTGCGGCACCTCAAGTTTCTCTCTC
TTTGGAAGGGGTGAGCGGTGCTGTGGAGGAAAATATCGAGGCGCACCTTACCTCGATTGATGAAAAGGATTATTCCACCT
CGTTGCGTTTTCAATCTCGTCTTGATGGCATCATTAATGGCGCGTTGAACGCATTGGGTTACTATCATGCCCAGATTGAC
TATCAAATCAGCGACGATCAGGAAGAACTGACGGCCCATATCACCCTGGGCGAACCGGTGAGAGTTGAGACCTTTGATGT
GCGCATTGAGGGGGAAGCCTCGAATGACAAAGATTTCCTGCAACTGTTAGAAAAATCGCCGCTTAAACAGGGGGCGATTT
TAAATCATGGCGACTACGACACGCTCAAATCCTCAATACGTAACCTCGCACTGCAAAAAGGCTATTTTAAAGGCGATTTT
ATCGAAACGCGTTTAGAGGTCGCAGCCGATCTCAATCAAGCGTTTGTGCGCCTCCATTACGACAGTGGGATGCGTTACCA
CTTTGGTCAAACGACCATTACGGGCAGTCAAATTGAAGAAAACCGAGTGCGCTCCTTGCAACCGTTTAAAGCCGGTGACC
CCTATTTGGTCGCCAAAGTGGGGGAGTACAATCAAAACCTCTCTAACACCGATTGGTTCTCATCGGTATTCGTCGAACCT
GATTTGTCATCCCTTGATGATACCCGCGAGTTGCCGATGAAAGTCAGCTTGGCTCCGCAAGCAAAAAACCAGATTGAAAC
GGGTATTGGTTACGCCACCGACGTTGAATTTCGCGGTACGCTGAAATGGAAAAAACCGTGGGTGAATGAACTTGGCCACA
GTTTTGACAGCAGCTTGTCGATCTCGAAACCAGAACAAACCGTGACCGCGGGTTATCAGATCCCGCTTGAAGATGTGTTG
CACGATTACTACCGCATTCAATACGCGATGAAACACGTCGACAGCCGAGACACCAAAAGCTTGGAATCGAACTTAGCCGT
TGAGCGTCATTGGTTGCTAGACAACCGTTGGCACAGAACGGTGTTTGTTCGTTATTTGATTGAAAACTATGAACAAGGTT
TGCAAGACGACGTCGCACAGTTTGTTTTGCCCGGCGTCTCTTTTTCTCGCAGTCGCGTGCGTGGTGGCAGCATGCCGAGC
TGGGGTGACAAACAGAGTATTACCTTTGAGTATGGTGACGACAATTTGTTGTCTGAAACGCGAGTGCTGCGCGTGCAAGG
CCGAACCACCTGGATTCGCAGCCTAGGTGAGAATCACCGTGGTCTTGCACGGCTTGAAGCGGGGGCCAACCTCACCGAGG
AATTTGAAAAGCTCTCGCCCTCGCTGCGTTTCTTCGCCGGTGGTGACAATAATCTACGTGGTTATGGTTACGAATCCATT
TCACCCAAAGACAGCAGTGGTGCCTTAACCGGGGCGCAGTACATTGCGACCAGTACGCTAGAGTACCAGTATCGCTTATA
TGGTAACTGGTGGGCGGCTGCCTTTGTTGATTATGGTGATGCCTTTAATGATGCGCCTGATTGGAAAACAGGGACGGGGC
TTGGCATTCGCTGGGCTTCGCCAGTAGGCCCAATTCGCATCGACTTCGCATGGGGGCTGGACGCCAAGCCGGGGGATGAG
TTCCGTTTGCACTTCACTTTGGGGCCTGAGTTATGA

Upstream 100 bases:

>100_bases
TTAACGCAACTTGTCTGCTTATGAGTTGTGTCGATTCTACACCACATTCATATCCGCAAAGCCTCGATGTCAGCCGACGT
TGTTTTGTACGTACTAAAGC

Downstream 100 bases:

>100_bases
TCAAAGTGGTGTTTAAATGGAGCAAGTGGATTTCTGCGGGTGTCATGGCGCTGCTGGTTTTGCTGCTGACCTTGATTGCT
CTGCTGCTCTTTACGCATCC

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:

>571_residues
MIKKVLPLLVSSLFASNLVAAPQVSLSLEGVSGAVEENIEAHLTSIDEKDYSTSLRFQSRLDGIINGALNALGYYHAQID
YQISDDQEELTAHITLGEPVRVETFDVRIEGEASNDKDFLQLLEKSPLKQGAILNHGDYDTLKSSIRNLALQKGYFKGDF
IETRLEVAADLNQAFVRLHYDSGMRYHFGQTTITGSQIEENRVRSLQPFKAGDPYLVAKVGEYNQNLSNTDWFSSVFVEP
DLSSLDDTRELPMKVSLAPQAKNQIETGIGYATDVEFRGTLKWKKPWVNELGHSFDSSLSISKPEQTVTAGYQIPLEDVL
HDYYRIQYAMKHVDSRDTKSLESNLAVERHWLLDNRWHRTVFVRYLIENYEQGLQDDVAQFVLPGVSFSRSRVRGGSMPS
WGDKQSITFEYGDDNLLSETRVLRVQGRTTWIRSLGENHRGLARLEAGANLTEEFEKLSPSLRFFAGGDNNLRGYGYESI
SPKDSSGALTGAQYIATSTLEYQYRLYGNWWAAAFVDYGDAFNDAPDWKTGTGLGIRWASPVGPIRIDFAWGLDAKPGDE
FRLHFTLGPEL

Sequences:

>Translated_571_residues
MIKKVLPLLVSSLFASNLVAAPQVSLSLEGVSGAVEENIEAHLTSIDEKDYSTSLRFQSRLDGIINGALNALGYYHAQID
YQISDDQEELTAHITLGEPVRVETFDVRIEGEASNDKDFLQLLEKSPLKQGAILNHGDYDTLKSSIRNLALQKGYFKGDF
IETRLEVAADLNQAFVRLHYDSGMRYHFGQTTITGSQIEENRVRSLQPFKAGDPYLVAKVGEYNQNLSNTDWFSSVFVEP
DLSSLDDTRELPMKVSLAPQAKNQIETGIGYATDVEFRGTLKWKKPWVNELGHSFDSSLSISKPEQTVTAGYQIPLEDVL
HDYYRIQYAMKHVDSRDTKSLESNLAVERHWLLDNRWHRTVFVRYLIENYEQGLQDDVAQFVLPGVSFSRSRVRGGSMPS
WGDKQSITFEYGDDNLLSETRVLRVQGRTTWIRSLGENHRGLARLEAGANLTEEFEKLSPSLRFFAGGDNNLRGYGYESI
SPKDSSGALTGAQYIATSTLEYQYRLYGNWWAAAFVDYGDAFNDAPDWKTGTGLGIRWASPVGPIRIDFAWGLDAKPGDE
FRLHFTLGPEL
>Mature_571_residues
MIKKVLPLLVSSLFASNLVAAPQVSLSLEGVSGAVEENIEAHLTSIDEKDYSTSLRFQSRLDGIINGALNALGYYHAQID
YQISDDQEELTAHITLGEPVRVETFDVRIEGEASNDKDFLQLLEKSPLKQGAILNHGDYDTLKSSIRNLALQKGYFKGDF
IETRLEVAADLNQAFVRLHYDSGMRYHFGQTTITGSQIEENRVRSLQPFKAGDPYLVAKVGEYNQNLSNTDWFSSVFVEP
DLSSLDDTRELPMKVSLAPQAKNQIETGIGYATDVEFRGTLKWKKPWVNELGHSFDSSLSISKPEQTVTAGYQIPLEDVL
HDYYRIQYAMKHVDSRDTKSLESNLAVERHWLLDNRWHRTVFVRYLIENYEQGLQDDVAQFVLPGVSFSRSRVRGGSMPS
WGDKQSITFEYGDDNLLSETRVLRVQGRTTWIRSLGENHRGLARLEAGANLTEEFEKLSPSLRFFAGGDNNLRGYGYESI
SPKDSSGALTGAQYIATSTLEYQYRLYGNWWAAAFVDYGDAFNDAPDWKTGTGLGIRWASPVGPIRIDFAWGLDAKPGDE
FRLHFTLGPEL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=571, Percent_Identity=41.6812609457093, Blast_Score=459, Evalue=1e-130,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 64253; Mature: 64253

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKVLPLLVSSLFASNLVAAPQVSLSLEGVSGAVEENIEAHLTSIDEKDYSTSLRFQSR
CHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCHHHHHHHCCCCCCHHHHHHHHH
LDGIINGALNALGYYHAQIDYQISDDQEELTAHITLGEPVRVETFDVRIEGEASNDKDFL
HHHHHHHHHHHHEEEEEEEEEEECCCCCCEEEEEECCCCEEEEEEEEEEECCCCCCHHHH
QLLEKSPLKQGAILNHGDYDTLKSSIRNLALQKGYFKGDFIETRLEVAADLNQAFVRLHY
HHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCEEEEEEEE
DSGMRYHFGQTTITGSQIEENRVRSLQPFKAGDPYLVAKVGEYNQNLSNTDWFSSVFVEP
CCCCEEECCCEEEECCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCHHEEEECC
DLSSLDDTRELPMKVSLAPQAKNQIETGIGYATDVEFRGTLKWKKPWVNELGHSFDSSLS
CCCCCCCHHCCCEEEEECCCHHHHHHHCCCEEECEEEEEEEECCCCHHHHHCCCCCCCCC
ISKPEQTVTAGYQIPLEDVLHDYYRIQYAMKHVDSRDTKSLESNLAVERHWLLDNRWHRT
CCCCCHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEECCCCCHHHH
VFVRYLIENYEQGLQDDVAQFVLPGVSFSRSRVRGGSMPSWGDKQSITFEYGDDNLLSET
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCHHCCC
RVLRVQGRTTWIRSLGENHRGLARLEAGANLTEEFEKLSPSLRFFAGGDNNLRGYGYESI
EEEEECCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
SPKDSSGALTGAQYIATSTLEYQYRLYGNWWAAAFVDYGDAFNDAPDWKTGTGLGIRWAS
CCCCCCCCCCCHHHHEEEEEEEEEEEEECEEEEHHHHHCCCCCCCCCCCCCCCCCEEECC
PVGPIRIDFAWGLDAKPGDEFRLHFTLGPEL
CCCCEEEEEEECCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MIKKVLPLLVSSLFASNLVAAPQVSLSLEGVSGAVEENIEAHLTSIDEKDYSTSLRFQSR
CHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCHHHHHHHCCCCCCHHHHHHHHH
LDGIINGALNALGYYHAQIDYQISDDQEELTAHITLGEPVRVETFDVRIEGEASNDKDFL
HHHHHHHHHHHHEEEEEEEEEEECCCCCCEEEEEECCCCEEEEEEEEEEECCCCCCHHHH
QLLEKSPLKQGAILNHGDYDTLKSSIRNLALQKGYFKGDFIETRLEVAADLNQAFVRLHY
HHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCEEEEEEEE
DSGMRYHFGQTTITGSQIEENRVRSLQPFKAGDPYLVAKVGEYNQNLSNTDWFSSVFVEP
CCCCEEECCCEEEECCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCHHEEEECC
DLSSLDDTRELPMKVSLAPQAKNQIETGIGYATDVEFRGTLKWKKPWVNELGHSFDSSLS
CCCCCCCHHCCCEEEEECCCHHHHHHHCCCEEECEEEEEEEECCCCHHHHHCCCCCCCCC
ISKPEQTVTAGYQIPLEDVLHDYYRIQYAMKHVDSRDTKSLESNLAVERHWLLDNRWHRT
CCCCCHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEECCCCCHHHH
VFVRYLIENYEQGLQDDVAQFVLPGVSFSRSRVRGGSMPSWGDKQSITFEYGDDNLLSET
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCHHCCC
RVLRVQGRTTWIRSLGENHRGLARLEAGANLTEEFEKLSPSLRFFAGGDNNLRGYGYESI
EEEEECCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
SPKDSSGALTGAQYIATSTLEYQYRLYGNWWAAAFVDYGDAFNDAPDWKTGTGLGIRWAS
CCCCCCCCCCCHHHHEEEEEEEEEEEEECEEEEHHHHHCCCCCCCCCCCCCCCCCEEECC
PVGPIRIDFAWGLDAKPGDEFRLHFTLGPEL
CCCCEEEEEEECCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]