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The map label for this gene is yccZ [C]

Identifier: 37678521

GI number: 37678521

Start: 343944

End: 345176

Strand: Direct

Name: yccZ [C]

Synonym: VV0337

Alternate gene names: 37678521

Gene position: 343944-345176 (Clockwise)

Preceding gene: 37678519

Following gene: 37678522

Centisome position: 10.25

GC content: 47.53

Gene sequence:

>1233_bases
ATGCTTTCAAAAGCGTTAGAAAGAAATGGTGTTCAATCGAACCTTTGCTCATTCAAGAGTGCTGTAAACACTCTTAATTT
AGACGATTTGGCTTACATGGAACTAAAAACAAAACTTCTGCTAGCGATGCTAGCGCCTGCCTTGCTTGCCGGTTGTACTG
TACCCGGCTCACATCTATCCACCGATAATAAAAACCTTGTTGAAGTGAACGATAGCAGCCAAGAAAGTAACCTTTCTGAG
GTGGTTAACCTGTATCCGCTAAACGCTCAATCGGTCACGGAATACGCCAAAGCGCAGCATTTTACTTCTCGCGCAAACCC
AGAGCTTGATGTGCAGATCGCCCGTTATGAATACAAAGTGGGCCCTGGCGACATTCTTAACGTTACCATTTGGGATCACC
CTGAACTGACGATTCCAGCAGGCTCTTACCGCAGTGCATCTGAAGCGGGTAGCTGGGTGCATGCAGATGGCACCATTTTC
TACCCATATATTGGCACTGTAGAAGTGGCAGATAAAACCGTGCGTGAGATCCGCGCTGATATCGCTAAACGTCTTGCGAA
GTTTATCGAAAGTCCACAGGTCGATGTCAACGTAGCCGCGTTTCGCTCTAAGAAAGCTTACATTACCGGTGAAGTTAAAG
TTTCAGGGCAGCAATCGATCACCAATATCCCCTTAACCATTCTTGATGCGGTTAACCGTGCTGGTGGCCTAGCGGAAGAT
GCAGATTGGCGTAACGTGACGCTCACTCGCAATGGTGAAGAGCAAACCATTTCTCTTTACGCGCTTATGCAGCGTGGTGA
TTTAACGCAAAACCGTTTATTAGAGCCGGGCGATATCATCCACGTGCCACGCAACGACAGCCAAAAAGTGTTTGTAATGG
GAGAAGTAAAAGATCCCAAACTGCTTAAAATGGATCGCTCTGGTATGAGCCTGACAGAAGCACTCAGCAGCGTTGGCGGA
ATCAACGAGCTCTCTGCCGATGCAACTGGCGTATTCGTCATCCGCACGTCAGACAACAAATCTGAACGCATGGCGGATAT
CTACCAGCTCAATATTAAAGATGCCTCTGCACTAGTGATTGGCACCGAATTCGATCTGAAACCATACGATATCGTCTATG
TGACCGCCGCACCTATTACTCGATGGAACCGTGTGATCAGTCAGCTAATGCCAACCATTACTGGCTTCAATGAACTAACG
GAAGGTGCTCTACGCGTTAAAACGTGGCCGTAA

Upstream 100 bases:

>100_bases
TTGTGCGAAGCTGCTTAAAATCGCAGTCAGTGTGGGAGCTAGGCTATAAAGTATAGTTAAATGCGGTTAAGGAAAACGCC
TTTAACTATGCTGAATACCT

Downstream 100 bases:

>100_bases
GAAAATTTTATAGGGACTAGATTACTAGGGACTAGGAAGAGCAGGATCTAGTTTTCTAGAGGCTAGAAAAAGACTAGTAA
CCTAGAAAACTATTGATCTA

Product: outer membrane capsular polysaccharide transport protein

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MLSKALERNGVQSNLCSFKSAVNTLNLDDLAYMELKTKLLLAMLAPALLAGCTVPGSHLSTDNKNLVEVNDSSQESNLSE
VVNLYPLNAQSVTEYAKAQHFTSRANPELDVQIARYEYKVGPGDILNVTIWDHPELTIPAGSYRSASEAGSWVHADGTIF
YPYIGTVEVADKTVREIRADIAKRLAKFIESPQVDVNVAAFRSKKAYITGEVKVSGQQSITNIPLTILDAVNRAGGLAED
ADWRNVTLTRNGEEQTISLYALMQRGDLTQNRLLEPGDIIHVPRNDSQKVFVMGEVKDPKLLKMDRSGMSLTEALSSVGG
INELSADATGVFVIRTSDNKSERMADIYQLNIKDASALVIGTEFDLKPYDIVYVTAAPITRWNRVISQLMPTITGFNELT
EGALRVKTWP

Sequences:

>Translated_410_residues
MLSKALERNGVQSNLCSFKSAVNTLNLDDLAYMELKTKLLLAMLAPALLAGCTVPGSHLSTDNKNLVEVNDSSQESNLSE
VVNLYPLNAQSVTEYAKAQHFTSRANPELDVQIARYEYKVGPGDILNVTIWDHPELTIPAGSYRSASEAGSWVHADGTIF
YPYIGTVEVADKTVREIRADIAKRLAKFIESPQVDVNVAAFRSKKAYITGEVKVSGQQSITNIPLTILDAVNRAGGLAED
ADWRNVTLTRNGEEQTISLYALMQRGDLTQNRLLEPGDIIHVPRNDSQKVFVMGEVKDPKLLKMDRSGMSLTEALSSVGG
INELSADATGVFVIRTSDNKSERMADIYQLNIKDASALVIGTEFDLKPYDIVYVTAAPITRWNRVISQLMPTITGFNELT
EGALRVKTWP
>Mature_410_residues
MLSKALERNGVQSNLCSFKSAVNTLNLDDLAYMELKTKLLLAMLAPALLAGCTVPGSHLSTDNKNLVEVNDSSQESNLSE
VVNLYPLNAQSVTEYAKAQHFTSRANPELDVQIARYEYKVGPGDILNVTIWDHPELTIPAGSYRSASEAGSWVHADGTIF
YPYIGTVEVADKTVREIRADIAKRLAKFIESPQVDVNVAAFRSKKAYITGEVKVSGQQSITNIPLTILDAVNRAGGLAED
ADWRNVTLTRNGEEQTISLYALMQRGDLTQNRLLEPGDIIHVPRNDSQKVFVMGEVKDPKLLKMDRSGMSLTEALSSVGG
INELSADATGVFVIRTSDNKSERMADIYQLNIKDASALVIGTEFDLKPYDIVYVTAAPITRWNRVISQLMPTITGFNELT
EGALRVKTWP

Specific function: May be involved in polysaccharide transport [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=374, Percent_Identity=60.6951871657754, Blast_Score=467, Evalue=1e-133,
Organism=Escherichia coli, GI1788376, Length=381, Percent_Identity=55.9055118110236, Blast_Score=445, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 45054; Mature: 45054

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSKALERNGVQSNLCSFKSAVNTLNLDDLAYMELKTKLLLAMLAPALLAGCTVPGSHLS
CCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TDNKNLVEVNDSSQESNLSEVVNLYPLNAQSVTEYAKAQHFTSRANPELDVQIARYEYKV
CCCCCEEEECCCCCCCCHHHHHEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEC
GPGDILNVTIWDHPELTIPAGSYRSASEAGSWVHADGTIFYPYIGTVEVADKTVREIRAD
CCCCEEEEEEECCCCEEECCCCCCCHHHCCCEEEECCEEEEEECCEEEHHHHHHHHHHHH
IAKRLAKFIESPQVDVNVAAFRSKKAYITGEVKVSGQQSITNIPLTILDAVNRAGGLAED
HHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCC
ADWRNVTLTRNGEEQTISLYALMQRGDLTQNRLLEPGDIIHVPRNDSQKVFVMGEVKDPK
CCCCEEEEEECCCCCEEEEEEEHHCCCCCHHHCCCCCCEEECCCCCCCEEEEEECCCCCC
LLKMDRSGMSLTEALSSVGGINELSADATGVFVIRTSDNKSERMADIYQLNIKDASALVI
EEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHEEEEEEEECCCEEEEE
GTEFDLKPYDIVYVTAAPITRWNRVISQLMPTITGFNELTEGALRVKTWP
EEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCHHHHCCCEEEEEECC
>Mature Secondary Structure
MLSKALERNGVQSNLCSFKSAVNTLNLDDLAYMELKTKLLLAMLAPALLAGCTVPGSHLS
CCCHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TDNKNLVEVNDSSQESNLSEVVNLYPLNAQSVTEYAKAQHFTSRANPELDVQIARYEYKV
CCCCCEEEECCCCCCCCHHHHHEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEC
GPGDILNVTIWDHPELTIPAGSYRSASEAGSWVHADGTIFYPYIGTVEVADKTVREIRAD
CCCCEEEEEEECCCCEEECCCCCCCHHHCCCEEEECCEEEEEECCEEEHHHHHHHHHHHH
IAKRLAKFIESPQVDVNVAAFRSKKAYITGEVKVSGQQSITNIPLTILDAVNRAGGLAED
HHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCC
ADWRNVTLTRNGEEQTISLYALMQRGDLTQNRLLEPGDIIHVPRNDSQKVFVMGEVKDPK
CCCCEEEEEECCCCCEEEEEEEHHCCCCCHHHCCCCCCEEECCCCCCCEEEEEECCCCCC
LLKMDRSGMSLTEALSSVGGINELSADATGVFVIRTSDNKSERMADIYQLNIKDASALVI
EEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHEEEEEEEECCCEEEEE
GTEFDLKPYDIVYVTAAPITRWNRVISQLMPTITGFNELTEGALRVKTWP
EEECCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCHHHHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7896702 [H]