| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is pagO [H]
Identifier: 37678442
GI number: 37678442
Start: 269057
End: 270097
Strand: Direct
Name: pagO [H]
Synonym: VV0258
Alternate gene names: 37678442
Gene position: 269057-270097 (Clockwise)
Preceding gene: 37678441
Following gene: 37678443
Centisome position: 8.02
GC content: 46.78
Gene sequence:
>1041_bases ATGCCGTGCGAATTAGTCATGCGTGTGAATAGATTACTATTTGCACCACCTAGTTATAGGAATTCAAAAATGAAAACTCA TCGATTTACTTTTGCTGAGTCTCTACCTGCGTTGTTGTTTCTCTCGGTATGTTTAATTTGGGGAACCACATGGTTTGCCA TGGAGATTGCCGTGCAAACTATTCCGCCTATTTTCGCTACTGGGCTACGATTTTTGATTGCCGCCCCTCTGCTGCTCATA CTCGGGCAACGTCTTAGACAGCCACTCTTTTTTCCAAAAGGAAAAATGCATTGGATGTTCATCGTCGCGATTTTTTATTT TGCGATCCCGTTTACCTTGATGATTTTTGGTGAACAGTATATTTCGTCAGGCTTGGCTTCGATTATTTTTGCCACCATGC CTATCGCGGTGATGATCACGTCGAGATGGTTTCTCGGATTGACGTTGCGTCGTTTGCAAACGGCTGGACTGTTGATCGCC GTACTCAGTTTGGTCCTGATTTTGGCGAAAGAGATGAGTCTGGGCGGAGACGATTATCTACTTGGTTTTCTTGCGCTTGG TGGCGCAGTTGCCATTCATGCCGTGATGTATGTGTGCGTGCAGAAGTATTGCCAAGACATTCCAGTGTTGACTTACAACG CGCTGCCGAGTTTGATGGCATCCATGCTGTTGTTGACGGCATCTTGGATAATTGAAAAGCCGGCGTTTTCAGTCTTCTCT CAAGTGTCGATGCTATCTGTCGTTTACTTGGGGGTCTTTGCCAGCGTGGGTGGCATTGTGGCCTATTTCAAACTGGGCCA GGTTTCAACGCCCTTTACCGCTTCGATTTGTTTCTTGTTTTTCCCGTTGATCGCACTGAGTCTTTCTACTTGGATGTCAG GCAACAGTATTTCCTCGACCTCGGTGGTTTTGTTGTTGCCACTGCTCGGTGGGATTTTTGTGACCAAAGCAGAACCTCAG TTTTGGGCTCGTTTTGGCCGCAAGCGCATTAAGTCAAAGCCAGTGCTGTGCAAGCGATGCATGAAGGAGCTGAACGTTTA G
Upstream 100 bases:
>100_bases TGTCATTTACACCAGCGCAGAGATGCGCACCCACTATCGTCCCCCAATAGCGTAATTCCTATCTCGCAGTGGTTTACTGC CCACAACCTTATTGCGCGCT
Downstream 100 bases:
>100_bases ACGAGAACGTTATCCAAAACAAAGCCCCGAATCTCGGGGCTTTATCAAATCGTTATAGAGTCAGAACCTATTCGATGTTT TGGATCTGCTCATTGAGTAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MPCELVMRVNRLLFAPPSYRNSKMKTHRFTFAESLPALLFLSVCLIWGTTWFAMEIAVQTIPPIFATGLRFLIAAPLLLI LGQRLRQPLFFPKGKMHWMFIVAIFYFAIPFTLMIFGEQYISSGLASIIFATMPIAVMITSRWFLGLTLRRLQTAGLLIA VLSLVLILAKEMSLGGDDYLLGFLALGGAVAIHAVMYVCVQKYCQDIPVLTYNALPSLMASMLLLTASWIIEKPAFSVFS QVSMLSVVYLGVFASVGGIVAYFKLGQVSTPFTASICFLFFPLIALSLSTWMSGNSISSTSVVLLLPLLGGIFVTKAEPQ FWARFGRKRIKSKPVLCKRCMKELNV
Sequences:
>Translated_346_residues MPCELVMRVNRLLFAPPSYRNSKMKTHRFTFAESLPALLFLSVCLIWGTTWFAMEIAVQTIPPIFATGLRFLIAAPLLLI LGQRLRQPLFFPKGKMHWMFIVAIFYFAIPFTLMIFGEQYISSGLASIIFATMPIAVMITSRWFLGLTLRRLQTAGLLIA VLSLVLILAKEMSLGGDDYLLGFLALGGAVAIHAVMYVCVQKYCQDIPVLTYNALPSLMASMLLLTASWIIEKPAFSVFS QVSMLSVVYLGVFASVGGIVAYFKLGQVSTPFTASICFLFFPLIALSLSTWMSGNSISSTSVVLLLPLLGGIFVTKAEPQ FWARFGRKRIKSKPVLCKRCMKELNV >Mature_345_residues PCELVMRVNRLLFAPPSYRNSKMKTHRFTFAESLPALLFLSVCLIWGTTWFAMEIAVQTIPPIFATGLRFLIAAPLLLIL GQRLRQPLFFPKGKMHWMFIVAIFYFAIPFTLMIFGEQYISSGLASIIFATMPIAVMITSRWFLGLTLRRLQTAGLLIAV LSLVLILAKEMSLGGDDYLLGFLALGGAVAIHAVMYVCVQKYCQDIPVLTYNALPSLMASMLLLTASWIIEKPAFSVFSQ VSMLSVVYLGVFASVGGIVAYFKLGQVSTPFTASICFLFFPLIALSLSTWMSGNSISSTSVVLLLPLLGGIFVTKAEPQF WARFGRKRIKSKPVLCKRCMKELNV
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 38419; Mature: 38288
Theoretical pI: Translated: 10.31; Mature: 10.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPCELVMRVNRLLFAPPSYRNSKMKTHRFTFAESLPALLFLSVCLIWGTTWFAMEIAVQT CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPPIFATGLRFLIAAPLLLILGQRLRQPLFFPKGKMHWMFIVAIFYFAIPFTLMIFGEQY CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ISSGLASIIFATMPIAVMITSRWFLGLTLRRLQTAGLLIAVLSLVLILAKEMSLGGDDYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LGFLALGGAVAIHAVMYVCVQKYCQDIPVLTYNALPSLMASMLLLTASWIIEKPAFSVFS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVSMLSVVYLGVFASVGGIVAYFKLGQVSTPFTASICFLFFPLIALSLSTWMSGNSISST HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH SVVLLLPLLGGIFVTKAEPQFWARFGRKRIKSKPVLCKRCMKELNV HHHHHHHHHCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC >Mature Secondary Structure PCELVMRVNRLLFAPPSYRNSKMKTHRFTFAESLPALLFLSVCLIWGTTWFAMEIAVQT CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPPIFATGLRFLIAAPLLLILGQRLRQPLFFPKGKMHWMFIVAIFYFAIPFTLMIFGEQY CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ISSGLASIIFATMPIAVMITSRWFLGLTLRRLQTAGLLIAVLSLVLILAKEMSLGGDDYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LGFLALGGAVAIHAVMYVCVQKYCQDIPVLTYNALPSLMASMLLLTASWIIEKPAFSVFS HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVSMLSVVYLGVFASVGGIVAYFKLGQVSTPFTASICFLFFPLIALSLSTWMSGNSISST HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH SVVLLLPLLGGIFVTKAEPQFWARFGRKRIKSKPVLCKRCMKELNV HHHHHHHHHCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9712687; 11677609 [H]