| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is 37678315
Identifier: 37678315
GI number: 37678315
Start: 138081
End: 140549
Strand: Direct
Name: 37678315
Synonym: VV0131
Alternate gene names: NA
Gene position: 138081-140549 (Clockwise)
Preceding gene: 37678314
Following gene: 37678316
Centisome position: 4.12
GC content: 39.69
Gene sequence:
>2469_bases ATGGCAAAAAGTCGATTAGCCGCATCTAGAAATAAAAAAAAGCTCATTACTCAACCAAAAGCGAAAGATAACGTTACTTC ATTAGATTTGAGTTTTAAATTACATCGAAAAGAGAATGCGTATGGTTATCAATTCAATCTTCTTGATTGGTGTCATGAGC AGTGCGATCCCCAAAGGCCATTAGTAAAACCATCTCGCTTGAAAATAATGCAAAAGCTAAGGTACTGGGTTGATCAAGAG AAAAAAAATAACAGTAGTGAAGGTTCTATATTTGCTAGGTTATCCATTTTAAAGCAGTACCTTGTTTTTTGTGACTTTAA AAAGAACTCCCCTTTTTGTCAGGCTGGATACCTTTCTTATGTTGGGAACGCTGGTGAATTGTGGCGTTTAGTTCATGAGG GGTGTGAGCAGAAAAAATATAGCTTTCAATACTATGATGGTGAAGAAGCTGGCATATTGGAATCCACTGCTTGTAGGAGA AAGATGTTCCTCGATAATCTTCTTTCGGTGCTTGGTGTTGATATATCTGAGTGGCAAGCTACGCTTAAACCTTTTTCTAC TATGAAGGATGAACCATCAACACAACCTTATATATCAAGTGAGTGGTATGGATTAGTTCGACGCACTCAACTTTTCTTTT TTTCTTTGGCAACTCAACTTATTGCTTTAAAAGAGGAGAACCCTGAAGTACTTCCCCCTCGATGCTTAGAAGGTATTGTT GTAGATAGGGTAAATGGTTGTGACATTACAATTGAGTTGGGAGGCGGTGATGTAAAAGATGGAGCTGGGAGTCCTTTTAA TCAATGTATGGCCGCAGCTTACACCTTATTTGCCTACTACACCGCATTTAATGACACACCGATTAAAGAGGTTCGTCATC CTATTAAAGTAGTAGTATCGAAGGTAGAAAATCGTACATCGAAAACAGCTCAAGTTCGCGCTTATAAAGGTCGCGCATCA AAAGACGTAAAGGCGTTGTTTTCAGGTACAGAAGAAAACTTGCATCCCGAAGCTAGTGAAAAAAGTGCTGGGTTTATTGT AGCTAATATTAATAAACGAGACAGTGTCGGTAAAGCCGATGGCATTACATTTCTTCAGACCTTTGAATTACTCTCAAAAA CGTTCAGTGATGACCCGTTTGATACCTTAATATATTGTCTCAATAGCCAAGGCGAAAAAGCTAAGACGGATCTGGCACAG GCTCTAGTGGCGTTATCAAGGAACTTAAATTTACTTTCTAGTGACAGAGGTGAGCTAGCCGATCACCTAGTTAAAACCTA TACCGATATTGTTGAAAATCAAAAGATGACCACTTTTAACTGGGTTCAGAGAGAAGATAACGCATGGGTAATGGACAGGC AGGTCATCGAACTAGGTAAAATAGTTGTAACACAAAGAGCAATTCCCATAGCTTACGCTGCCATCTCATGTATGACGGAT GTTTCACTTCGAAACGTACTGATGCCACTTAGATACTCAGATAAAGATATAGATGGAAATATCACGATTTCTTTTAAATA TCTTGATGGCTCAAAAGGCGATTTTACTGTTGATTCTAAATACCGCCGTTTCCTTCAATTAGTAGAGCGCTATGCAGCAA CGAGAAACCCGATACCTGGTATAACGCGAGTTGGTCTGAGTAATCGGCGTAGTGGTGGAACCAAACCTCCTTTTCTACTG CCTTTGGGGAAGCAAAATCATACTTACCAGTGGTCCGAAGGAAAGGTGCCTATAAGCTCATATTTGTTGAATTTGTGCGG TATAGACCATGGAGACTACTTTTTAAATATAAATTCAAGTCGAATTCGAGTTACTCACTCTGACTTAGAGTACAAACCAG AAGAGCGTGGGTTGACTGCTCAAAAGATTTTGCAGCACAGCATTGAAACGGCTGATAGGCGATACCGAAATGGGCATCCT GTTTCAAATAGTAAGCAAATATCGCAAGGAATGATGGTGCTAAGTCACATCGCTGCGGGAAAGACACGCAATGAAGCTAT AGAAACAGTTGAGCAAGAGCTAAAAATTCCTGTTTTAGAATACGAAATTTGGAAAAAACGTAACCGACCCACTAACCCTA ACGGTGTTGATTGTGACGGTAAAGTTGATCTGAGTTCAGAAAAAGATTGGCATTATGCGGCGCGTAAATTTGCAGAAGAA AAGGGGATTATTGAAGAAGGGCAGGATATCACCTGTTATCAATACGATCTGTGCCCCTTTTGCAAAAGCGCCAAGCTTGT TGATGATCCCTACGCTATTTATAAATTGCTGAGTTTTCTCGATGCGCTAAGTGAAGGTATTGATCAATATCCAGAACGAG CGTCCATCATCCAATCGAAGATAGAACGCTTTCAAGTCCACCTTGATGACGTACCATTAGAAACAATTGAACAAGCTGAA GATTTGTTTGAAGAAAAAGGGCGTTATTTACTTTTCAACTCATTATCTTCTGTTACCCAATACCTATAA
Upstream 100 bases:
>100_bases ACTACTCAAAAATACATTAACTATCTAAATGATGATAAAACATGGTTTGAATTCTCTCAGCGAAAAAATCAATTTGCACA AGAAGTGTTGAGGTGAGCAT
Downstream 100 bases:
>100_bases GGAACATACTTATGTTGTCTTTTGATAATTCGCAAGATTTAGAATTAACTTTAGATGCCATGCGCTCCATTGGTGGTCAA AAAGATTATTTGCAGCAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 822; Mature: 821
Protein sequence:
>822_residues MAKSRLAASRNKKKLITQPKAKDNVTSLDLSFKLHRKENAYGYQFNLLDWCHEQCDPQRPLVKPSRLKIMQKLRYWVDQE KKNNSSEGSIFARLSILKQYLVFCDFKKNSPFCQAGYLSYVGNAGELWRLVHEGCEQKKYSFQYYDGEEAGILESTACRR KMFLDNLLSVLGVDISEWQATLKPFSTMKDEPSTQPYISSEWYGLVRRTQLFFFSLATQLIALKEENPEVLPPRCLEGIV VDRVNGCDITIELGGGDVKDGAGSPFNQCMAAAYTLFAYYTAFNDTPIKEVRHPIKVVVSKVENRTSKTAQVRAYKGRAS KDVKALFSGTEENLHPEASEKSAGFIVANINKRDSVGKADGITFLQTFELLSKTFSDDPFDTLIYCLNSQGEKAKTDLAQ ALVALSRNLNLLSSDRGELADHLVKTYTDIVENQKMTTFNWVQREDNAWVMDRQVIELGKIVVTQRAIPIAYAAISCMTD VSLRNVLMPLRYSDKDIDGNITISFKYLDGSKGDFTVDSKYRRFLQLVERYAATRNPIPGITRVGLSNRRSGGTKPPFLL PLGKQNHTYQWSEGKVPISSYLLNLCGIDHGDYFLNINSSRIRVTHSDLEYKPEERGLTAQKILQHSIETADRRYRNGHP VSNSKQISQGMMVLSHIAAGKTRNEAIETVEQELKIPVLEYEIWKKRNRPTNPNGVDCDGKVDLSSEKDWHYAARKFAEE KGIIEEGQDITCYQYDLCPFCKSAKLVDDPYAIYKLLSFLDALSEGIDQYPERASIIQSKIERFQVHLDDVPLETIEQAE DLFEEKGRYLLFNSLSSVTQYL
Sequences:
>Translated_822_residues MAKSRLAASRNKKKLITQPKAKDNVTSLDLSFKLHRKENAYGYQFNLLDWCHEQCDPQRPLVKPSRLKIMQKLRYWVDQE KKNNSSEGSIFARLSILKQYLVFCDFKKNSPFCQAGYLSYVGNAGELWRLVHEGCEQKKYSFQYYDGEEAGILESTACRR KMFLDNLLSVLGVDISEWQATLKPFSTMKDEPSTQPYISSEWYGLVRRTQLFFFSLATQLIALKEENPEVLPPRCLEGIV VDRVNGCDITIELGGGDVKDGAGSPFNQCMAAAYTLFAYYTAFNDTPIKEVRHPIKVVVSKVENRTSKTAQVRAYKGRAS KDVKALFSGTEENLHPEASEKSAGFIVANINKRDSVGKADGITFLQTFELLSKTFSDDPFDTLIYCLNSQGEKAKTDLAQ ALVALSRNLNLLSSDRGELADHLVKTYTDIVENQKMTTFNWVQREDNAWVMDRQVIELGKIVVTQRAIPIAYAAISCMTD VSLRNVLMPLRYSDKDIDGNITISFKYLDGSKGDFTVDSKYRRFLQLVERYAATRNPIPGITRVGLSNRRSGGTKPPFLL PLGKQNHTYQWSEGKVPISSYLLNLCGIDHGDYFLNINSSRIRVTHSDLEYKPEERGLTAQKILQHSIETADRRYRNGHP VSNSKQISQGMMVLSHIAAGKTRNEAIETVEQELKIPVLEYEIWKKRNRPTNPNGVDCDGKVDLSSEKDWHYAARKFAEE KGIIEEGQDITCYQYDLCPFCKSAKLVDDPYAIYKLLSFLDALSEGIDQYPERASIIQSKIERFQVHLDDVPLETIEQAE DLFEEKGRYLLFNSLSSVTQYL >Mature_821_residues AKSRLAASRNKKKLITQPKAKDNVTSLDLSFKLHRKENAYGYQFNLLDWCHEQCDPQRPLVKPSRLKIMQKLRYWVDQEK KNNSSEGSIFARLSILKQYLVFCDFKKNSPFCQAGYLSYVGNAGELWRLVHEGCEQKKYSFQYYDGEEAGILESTACRRK MFLDNLLSVLGVDISEWQATLKPFSTMKDEPSTQPYISSEWYGLVRRTQLFFFSLATQLIALKEENPEVLPPRCLEGIVV DRVNGCDITIELGGGDVKDGAGSPFNQCMAAAYTLFAYYTAFNDTPIKEVRHPIKVVVSKVENRTSKTAQVRAYKGRASK DVKALFSGTEENLHPEASEKSAGFIVANINKRDSVGKADGITFLQTFELLSKTFSDDPFDTLIYCLNSQGEKAKTDLAQA LVALSRNLNLLSSDRGELADHLVKTYTDIVENQKMTTFNWVQREDNAWVMDRQVIELGKIVVTQRAIPIAYAAISCMTDV SLRNVLMPLRYSDKDIDGNITISFKYLDGSKGDFTVDSKYRRFLQLVERYAATRNPIPGITRVGLSNRRSGGTKPPFLLP LGKQNHTYQWSEGKVPISSYLLNLCGIDHGDYFLNINSSRIRVTHSDLEYKPEERGLTAQKILQHSIETADRRYRNGHPV SNSKQISQGMMVLSHIAAGKTRNEAIETVEQELKIPVLEYEIWKKRNRPTNPNGVDCDGKVDLSSEKDWHYAARKFAEEK GIIEEGQDITCYQYDLCPFCKSAKLVDDPYAIYKLLSFLDALSEGIDQYPERASIIQSKIERFQVHLDDVPLETIEQAED LFEEKGRYLLFNSLSSVTQYL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93445; Mature: 93314
Theoretical pI: Translated: 7.75; Mature: 7.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKSRLAASRNKKKLITQPKAKDNVTSLDLSFKLHRKENAYGYQFNLLDWCHEQCDPQRP CCCHHHHHCCCCHHCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEHHHHHHHHHCCCCCC LVKPSRLKIMQKLRYWVDQEKKNNSSEGSIFARLSILKQYLVFCDFKKNSPFCQAGYLSY CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHH VGNAGELWRLVHEGCEQKKYSFQYYDGEEAGILESTACRRKMFLDNLLSVLGVDISEWQA CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH TLKPFSTMKDEPSTQPYISSEWYGLVRRTQLFFFSLATQLIALKEENPEVLPPRCLEGIV HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHH VDRVNGCDITIELGGGDVKDGAGSPFNQCMAAAYTLFAYYTAFNDTPIKEVRHPIKVVVS EECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH KVENRTSKTAQVRAYKGRASKDVKALFSGTEENLHPEASEKSAGFIVANINKRDSVGKAD HHHHHCCCHHHEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC GITFLQTFELLSKTFSDDPFDTLIYCLNSQGEKAKTDLAQALVALSRNLNLLSSDRGELA CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHCCCHHHHH DHLVKTYTDIVENQKMTTFNWVQREDNAWVMDRQVIELGKIVVTQRAIPIAYAAISCMTD HHHHHHHHHHHHCCCCEEEEHEEECCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH VSLRNVLMPLRYSDKDIDGNITISFKYLDGSKGDFTVDSKYRRFLQLVERYAATRNPIPG HHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCEEECHHHHHHHHHHHHHHHCCCCCCC ITRVGLSNRRSGGTKPPFLLPLGKQNHTYQWSEGKVPISSYLLNLCGIDHGDYFLNINSS HHCCCCCCCCCCCCCCCEEEECCCCCCCEECCCCCCCHHHHHHHHHCCCCCCEEEEECCC RIRVTHSDLEYKPEERGLTAQKILQHSIETADRRYRNGHPVSNSKQISQGMMVLSHIAAG EEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC KTRNEAIETVEQELKIPVLEYEIWKKRNRPTNPNGVDCDGKVDLSSEKDWHYAARKFAEE CCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KGIIEEGQDITCYQYDLCPFCKSAKLVDDPYAIYKLLSFLDALSEGIDQYPERASIIQSK CCCHHCCCCCEEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH IERFQVHLDDVPLETIEQAEDLFEEKGRYLLFNSLSSVTQYL HHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHCC >Mature Secondary Structure AKSRLAASRNKKKLITQPKAKDNVTSLDLSFKLHRKENAYGYQFNLLDWCHEQCDPQRP CCHHHHHCCCCHHCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEHHHHHHHHHCCCCCC LVKPSRLKIMQKLRYWVDQEKKNNSSEGSIFARLSILKQYLVFCDFKKNSPFCQAGYLSY CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHH VGNAGELWRLVHEGCEQKKYSFQYYDGEEAGILESTACRRKMFLDNLLSVLGVDISEWQA CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH TLKPFSTMKDEPSTQPYISSEWYGLVRRTQLFFFSLATQLIALKEENPEVLPPRCLEGIV HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHH VDRVNGCDITIELGGGDVKDGAGSPFNQCMAAAYTLFAYYTAFNDTPIKEVRHPIKVVVS EECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH KVENRTSKTAQVRAYKGRASKDVKALFSGTEENLHPEASEKSAGFIVANINKRDSVGKAD HHHHHCCCHHHEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC GITFLQTFELLSKTFSDDPFDTLIYCLNSQGEKAKTDLAQALVALSRNLNLLSSDRGELA CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHCCCHHHHH DHLVKTYTDIVENQKMTTFNWVQREDNAWVMDRQVIELGKIVVTQRAIPIAYAAISCMTD HHHHHHHHHHHHCCCCEEEEHEEECCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH VSLRNVLMPLRYSDKDIDGNITISFKYLDGSKGDFTVDSKYRRFLQLVERYAATRNPIPG HHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCEEECHHHHHHHHHHHHHHHCCCCCCC ITRVGLSNRRSGGTKPPFLLPLGKQNHTYQWSEGKVPISSYLLNLCGIDHGDYFLNINSS HHCCCCCCCCCCCCCCCEEEECCCCCCCEECCCCCCCHHHHHHHHHCCCCCCEEEEECCC RIRVTHSDLEYKPEERGLTAQKILQHSIETADRRYRNGHPVSNSKQISQGMMVLSHIAAG EEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC KTRNEAIETVEQELKIPVLEYEIWKKRNRPTNPNGVDCDGKVDLSSEKDWHYAARKFAEE CCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KGIIEEGQDITCYQYDLCPFCKSAKLVDDPYAIYKLLSFLDALSEGIDQYPERASIIQSK CCCHHCCCCCEEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH IERFQVHLDDVPLETIEQAEDLFEEKGRYLLFNSLSSVTQYL HHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA