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The map label for this gene is 37523912

Identifier: 37523912

GI number: 37523912

Start: 4575381

End: 4575791

Strand: Direct

Name: 37523912

Synonym: glr4343

Alternate gene names: NA

Gene position: 4575381-4575791 (Clockwise)

Preceding gene: 37523911

Following gene: 37523913

Centisome position: 98.2

GC content: 55.96

Gene sequence:

>411_bases
ATGGACACTCACCGCTATCTGCTAGACACCAATATCATTTCCAATTTGATCCGGTATCCAGGTGGCGCAGTAGCTCCCCA
CATCGCCCGAGTTGGGGAAGATAAAGTATGTACCAGCATTATTGTCGCCGGTGAACTGCGCTTCGGCGCGGTCAAGAAAG
GCTCGACACGGCTGTCTGCGCAGCTTGAGACAGTATTGTCGGGGCTCGATATATTGCCCTTCGAGTCTCCCGGCGCTCAA
CACTACGCGACCCTGCGAGCAGCTATCGAAAGGACAGGAGCGCCGATTGGCTCCAATGACATGTTTATCGCCGCCCATGC
GCTGTCCCTCGGATTGATTCTGGTGACCGGCAATCTACGTGAATTCGCCCGCGTACCGGGGCTGAGCGTCGAGAACTGGC
TGGATCTTTGA

Upstream 100 bases:

>100_bases
CGACGCTCCCTGCTGGCTATCCTTGCAACCTTAAAACCCCTCGATGAGGAATTTCCCGACATCGACGATTTTCCGCCTCT
CAACGACGTGAATCTGTGAG

Downstream 100 bases:

>100_bases
ACAGGGAGGCCCAGGTAACCCACTCGCTTGAATACGCTGTTCCCTGCACAAAGGCAAGACCCCGGTATGCGCTAGTCTCA
AATGGCATGTTTCTTGAATA

Product: virulence-associated protein VapC-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MDTHRYLLDTNIISNLIRYPGGAVAPHIARVGEDKVCTSIIVAGELRFGAVKKGSTRLSAQLETVLSGLDILPFESPGAQ
HYATLRAAIERTGAPIGSNDMFIAAHALSLGLILVTGNLREFARVPGLSVENWLDL

Sequences:

>Translated_136_residues
MDTHRYLLDTNIISNLIRYPGGAVAPHIARVGEDKVCTSIIVAGELRFGAVKKGSTRLSAQLETVLSGLDILPFESPGAQ
HYATLRAAIERTGAPIGSNDMFIAAHALSLGLILVTGNLREFARVPGLSVENWLDL
>Mature_136_residues
MDTHRYLLDTNIISNLIRYPGGAVAPHIARVGEDKVCTSIIVAGELRFGAVKKGSTRLSAQLETVLSGLDILPFESPGAQ
HYATLRAAIERTGAPIGSNDMFIAAHALSLGLILVTGNLREFARVPGLSVENWLDL

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 14565; Mature: 14565

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTHRYLLDTNIISNLIRYPGGAVAPHIARVGEDKVCTSIIVAGELRFGAVKKGSTRLSA
CCCCHHEEHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHEECCCCCCCCCCCCHHHHH
QLETVLSGLDILPFESPGAQHYATLRAAIERTGAPIGSNDMFIAAHALSLGLILVTGNLR
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHEEEEEECCHH
EFARVPGLSVENWLDL
HHHHCCCCCHHHHCCC
>Mature Secondary Structure
MDTHRYLLDTNIISNLIRYPGGAVAPHIARVGEDKVCTSIIVAGELRFGAVKKGSTRLSA
CCCCHHEEHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHEECCCCCCCCCCCCHHHHH
QLETVLSGLDILPFESPGAQHYATLRAAIERTGAPIGSNDMFIAAHALSLGLILVTGNLR
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHEEEEEECCHH
EFARVPGLSVENWLDL
HHHHCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]