BacMap

Definition	Gloeobacter violaceus PCC 7421 chromosome, complete genome.
Accession	NC_005125
Length	4,659,019

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The map label for this gene is 37523766

Identifier: 37523766

GI number: 37523766

Start: 4393576

End: 4394655

Strand: Direct

Name: 37523766

Synonym: glr4197

Alternate gene names: NA

Gene position: 4393576-4394655 (Clockwise)

Preceding gene: 37523765

Following gene: 37523767

Centisome position: 94.3

GC content: 51.02

Gene sequence:

>1080_bases
ATGTTCCCGACCGGCTGGCGGCCCAAACTTTCAGAGTCCATCGCTGCAAGTCGTATGCTATGGCAACCGATGGCTGCAGT
TGCGGTGGTGCAGATAGGTTTGTTGTGGTTCTCCCCACCGGTTTGGGGCCAGGATATGGTCTCGCCGCCCCCGCCCATTG
CCGATGAGCCGCTCACCGTGAACACGGGCATCTACCTGATCGAGTGCTACAGCCTCGACGACAAAGCAGAAACCTTCAAG
GTGAATGCCTTTTTAAGTTTGAGCTGGAAGGACAGGCGCCTGGCGTTTGATCCGGTCCGCAGCGGCGTTCGCGTCAAAAC
CTACGAACCCGAAGCGATCTGGATACCGGAGATCCGCTTTGTCAATGTCGAAAATGCCCGCGACGCCGATGTGGTGGATA
TTTCGGTAAGCCCGGACGGGACGGTACAGTATCTGGAACGCTTCTCTGCCCGAGTTCTCTCGCCGCTGGATTTTCGCCGC
TATCCTTTTGATTCGCAGACTTTACACATTTACTTGATCGTCCGTTCGGTCGACACCCGCAATATCGTGCTTGCGGTCGA
CCTAGAAAAAGTGGGCAAAAACGACGATGTGTTCTTGACGGGATGGGATATCGAAAGCTTTACCGCCGTGGTGAAGCCTG
CAAACTTCGCTCTGGAAGACAGGCTTGAATCGAAACTGGACTACCAGTTGCGGATTTCTCGTCAATATTTTTCGTACATT
CCCAACATCATTTTGCCGATGCTGTTTATTTTATTTATCTCCTGGACTGCCTTCTGGTCTACTTCTTACGAAGCGAATGT
AACGCTGGTGGTCTCGACGCTTATCGCCCACATCGCCTTCAATATTCTGGTAGAAACCAATCTTCCAAAGACCCCCTACA
TGACCTACACGGGGGCAATTATTTTTATGATTTACCTATTTTATTTTGTGGCCGTCATTGAAGTTACCGTTCAGCATTAT
CTAAAAGTTGAGAGCCAGCCCGCCAGGGCGGCGTCGATTACACGCGCCTCTCGCATCGCGTTTCCCGTTGTATTCTTGCT
GGCAAATATTATTCTGGCATTTCTTTTCTTTGGATTTTAG

Upstream 100 bases:

>100_bases
GCCAGGTTAACAATGTCAAAGATCTGGTCCTGCGGACTGGCTTTAAGTCCGAATTGGGGTATATCTGACCTATCGAATTT
CAACCAGGAGGTCCGCCGGG

Downstream 100 bases:

>100_bases
CTCAAGGAGCCCGTCGTGCTGTCTAACGCTCTGGACAAAGTCGATACTCGTTTGCAGTCAAAAAATGCTCTCGTATTTGG
CGAAGAATCCTATACTTACA

Product: hypothetical protein

Products: NA

Alternate protein names: ELIC [H]

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MFPTGWRPKLSESIAASRMLWQPMAAVAVVQIGLLWFSPPVWGQDMVSPPPPIADEPLTVNTGIYLIECYSLDDKAETFK
VNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRR
YPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYI
PNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY
LKVESQPARAASITRASRIAFPVVFLLANIILAFLFFGF

Sequences:

>Translated_359_residues
MFPTGWRPKLSESIAASRMLWQPMAAVAVVQIGLLWFSPPVWGQDMVSPPPPIADEPLTVNTGIYLIECYSLDDKAETFK
VNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRR
YPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYI
PNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY
LKVESQPARAASITRASRIAFPVVFLLANIILAFLFFGF
>Mature_359_residues
MFPTGWRPKLSESIAASRMLWQPMAAVAVVQIGLLWFSPPVWGQDMVSPPPPIADEPLTVNTGIYLIECYSLDDKAETFK
VNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRR
YPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYI
PNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY
LKVESQPARAASITRASRIAFPVVFLLANIILAFLFFGF

Specific function: Mediates cation-selective currents but does not discriminate between different monovalent cations [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ligand-gated ion channel (TC 1.A.9) family [H]

Homologues:

Organism=Homo sapiens, GI4503865, Length=296, Percent_Identity=23.6486486486486, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI12548785, Length=296, Percent_Identity=23.6486486486486, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI4503867, Length=310, Percent_Identity=23.2258064516129, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI12548788, Length=310, Percent_Identity=23.2258064516129, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI300797181, Length=281, Percent_Identity=24.1992882562278, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI300797159, Length=269, Percent_Identity=24.907063197026, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI34734071, Length=278, Percent_Identity=21.9424460431655, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI194097327, Length=263, Percent_Identity=23.9543726235741, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI153266866, Length=292, Percent_Identity=22.9452054794521, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI157743288, Length=298, Percent_Identity=22.1476510067114, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI268838843, Length=282, Percent_Identity=21.9858156028369, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI194097386, Length=269, Percent_Identity=23.4200743494424, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI169646728, Length=326, Percent_Identity=22.0858895705521, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI169646723, Length=326, Percent_Identity=22.0858895705521, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI4504021, Length=326, Percent_Identity=22.0858895705521, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI38788155, Length=294, Percent_Identity=21.7687074829932, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI38788135, Length=294, Percent_Identity=21.7687074829932, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI284925161, Length=298, Percent_Identity=22.4832214765101, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4757982, Length=248, Percent_Identity=23.7903225806452, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI110347433, Length=322, Percent_Identity=21.7391304347826, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI7657106, Length=265, Percent_Identity=24.5283018867925, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI260593684, Length=312, Percent_Identity=23.3974358974359, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI4504023, Length=312, Percent_Identity=23.3974358974359, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI189083734, Length=291, Percent_Identity=21.9931271477663, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI189083732, Length=291, Percent_Identity=21.9931271477663, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI189083730, Length=291, Percent_Identity=21.9931271477663, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI189083728, Length=291, Percent_Identity=21.9931271477663, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI189083726, Length=291, Percent_Identity=21.9931271477663, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI189083724, Length=291, Percent_Identity=21.9931271477663, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI38327554, Length=291, Percent_Identity=21.9931271477663, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI110347441, Length=298, Percent_Identity=21.8120805369128, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71985004, Length=319, Percent_Identity=26.6457680250784, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI193209644, Length=319, Percent_Identity=26.6457680250784, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71996779, Length=295, Percent_Identity=23.3898305084746, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI115532178, Length=290, Percent_Identity=22.4137931034483, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115532183, Length=290, Percent_Identity=22.4137931034483, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI115534185, Length=283, Percent_Identity=26.5017667844523, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71988451, Length=288, Percent_Identity=21.1805555555556, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71980442, Length=288, Percent_Identity=25.6944444444444, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17559548, Length=323, Percent_Identity=24.7678018575851, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71999575, Length=278, Percent_Identity=24.8201438848921, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71980440, Length=288, Percent_Identity=25.3472222222222, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17509393, Length=251, Percent_Identity=23.1075697211155, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI72000177, Length=326, Percent_Identity=24.8466257668712, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI25154135, Length=296, Percent_Identity=23.6486486486486, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71998208, Length=296, Percent_Identity=23.6486486486486, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI72000175, Length=325, Percent_Identity=24.6153846153846, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17509397, Length=274, Percent_Identity=23.3576642335766, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71981619, Length=282, Percent_Identity=23.4042553191489, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71999841, Length=296, Percent_Identity=23.6486486486486, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17541476, Length=254, Percent_Identity=24.4094488188976, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71996759, Length=285, Percent_Identity=22.4561403508772, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115535200, Length=266, Percent_Identity=25.187969924812, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI25151135, Length=288, Percent_Identity=21.875, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45550641, Length=274, Percent_Identity=24.8175182481752, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24642352, Length=288, Percent_Identity=22.5694444444444, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI45555535, Length=288, Percent_Identity=22.5694444444444, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI281362085, Length=296, Percent_Identity=22.972972972973, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI85725242, Length=276, Percent_Identity=24.2753623188406, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24648249, Length=276, Percent_Identity=24.2753623188406, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI62472736, Length=276, Percent_Identity=23.5507246376812, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI281362087, Length=276, Percent_Identity=23.5507246376812, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24648251, Length=282, Percent_Identity=23.758865248227, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281362083, Length=253, Percent_Identity=23.7154150197628, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24639780, Length=279, Percent_Identity=24.7311827956989, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24651625, Length=291, Percent_Identity=23.7113402061856, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28573876, Length=289, Percent_Identity=22.4913494809689, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45550957, Length=264, Percent_Identity=24.2424242424242, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006202
- InterPro:   IPR006201
- InterPro:   IPR006029 [H]

Pfam domain/function: PF02931 Neur_chan_LBD [H]

EC number: NA

Molecular weight: Translated: 40986; Mature: 40986

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPTGWRPKLSESIAASRMLWQPMAAVAVVQIGLLWFSPPVWGQDMVSPPPPIADEPLTV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
NTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRF
ECCEEEEEEECCCCCCCEEEEEEEEEECCCCCCEEEHHHHCCCEEEEECCCEEEECCEEE
VNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTR
EECCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCC
NIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYI
EEEEEEEHHHCCCCCCEEEEECCHHHHHHEECCCCHHHHHHHHHCCCEEEEEHHHHHHHH
PNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAFNILVETNLPKTPYMTYTGAI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHH
IFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFFGF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFPTGWRPKLSESIAASRMLWQPMAAVAVVQIGLLWFSPPVWGQDMVSPPPPIADEPLTV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEE
NTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRF
ECCEEEEEEECCCCCCCEEEEEEEEEECCCCCCEEEHHHHCCCEEEEECCCEEEECCEEE
VNVENARDADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTR
EECCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCC
NIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYI
EEEEEEEHHHCCCCCCEEEEECCHHHHHHEECCCCHHHHHHHHHCCCEEEEEHHHHHHHH
PNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAFNILVETNLPKTPYMTYTGAI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHH
IFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFFGF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA