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The map label for this gene is ycf56

Identifier: 37523688

GI number: 37523688

Start: 4313511

End: 4314464

Strand: Direct

Name: ycf56

Synonym: gvip548

Alternate gene names: 37523688

Gene position: 4313511-4314464 (Clockwise)

Preceding gene: 37523687

Following gene: 37523689

Centisome position: 92.58

GC content: 65.3

Gene sequence:

>954_bases
ATGTTGCTGACATTTTTGGGAACCAGCAGCGGCACACCCACCCGCTCGCGCAACGTCACGTCGATCGCTTTGCAGTTGCC
GCAGCGCTCCAGCCTGTGGCTGTTTGACTGCGGCGAGGGCACCCAGCACCAGGTCTTGCGCACGCCTTTGCGCCTCAGCC
AGCTGGAGAAAGTCTTCTTCACCCACCTGCACGGGGATCACCTGTTCGGGTTGGTGGGGTTGCTTGCCAGCCGCGCTTTG
GGCAGCGCCGGGACGACACCGGTGAAGCTCTATGGCCCACCGGGACTGCAGGAGTACGTGCGCGCCACCCTGCGCTATAG
CGACACCCACATCAACTATCCAATCCACTTTCAGACCGTCGAGCCGGGTCTGGTGCTGAGCGAGGAGGGCTTTACGGTGC
TTGCCAACGCCCTCAAGCACCGGATCTCGGCCTTCGGCTACAGCGTCATCGAACACGACCAGCCCGGCCGCTTCGACGCT
GAGCGGGCCGCCCAGCTGGGTATTCCCTTTGGGCCACTGTACGGCCAGCTCAAGGCGGGCCGTACAGTGGCGCTTCCCGA
CGGCCGCACCGTGGACGGGCGCACCCTGGTCGGCCCCGAGCGCAAGGGCCGCAAGCTCACCTACTGCTCCGATACCATCT
ATACCCCCAGCGCCATCGAGCTGGCTTTGGGAGCCGACGTGCTCATCCACGAAGCGACCTACTGCGAAGCGGATCTGAAC
CTGGCGGAGCGCGGCCTGCACTCGACGGCGGCGATGGCCGCCCGGGTCGCCCGCGAAGCAAAGGTGCGCCAGCTCATCCT
CACCCACTTCAGCCCCCGCTACGAGGCGGGTCTTGCCGCCCTGCGCACCGAGGCGGAGGCGATTTTCCCGAACGTGCGGA
TGGCCGAAGATTTCTGGCGCTATGAGATCAAAGCGGTCGAAGCGCAGTTGCCGAAAGCCCTGGTGGAGCAGTAG

Upstream 100 bases:

>100_bases
ACCCGCGCGGCCGGTTCTACCAAAGCGAGCCGTCCCGATCGCCAGGACGCGCCTGCCGTTCCGTAGCGGTACAGTCCCCC
AAAATTGTTACAACTGAGGG

Downstream 100 bases:

>100_bases
GCTCGGCCTGCGCTTCGTGCCGATATCCGGACCCGTTGCCTTGGGATTTCAGAAACTCGAACCTGCAGGTCGTCGGCTGA
CTGGCACCAACGGTATGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: RNase Z; tRNA 3 endonuclease; tRNase Z

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLLTFLGTSSGTPTRSRNVTSIALQLPQRSSLWLFDCGEGTQHQVLRTPLRLSQLEKVFFTHLHGDHLFGLVGLLASRAL
GSAGTTPVKLYGPPGLQEYVRATLRYSDTHINYPIHFQTVEPGLVLSEEGFTVLANALKHRISAFGYSVIEHDQPGRFDA
ERAAQLGIPFGPLYGQLKAGRTVALPDGRTVDGRTLVGPERKGRKLTYCSDTIYTPSAIELALGADVLIHEATYCEADLN
LAERGLHSTAAMAARVAREAKVRQLILTHFSPRYEAGLAALRTEAEAIFPNVRMAEDFWRYEIKAVEAQLPKALVEQ

Sequences:

>Translated_317_residues
MLLTFLGTSSGTPTRSRNVTSIALQLPQRSSLWLFDCGEGTQHQVLRTPLRLSQLEKVFFTHLHGDHLFGLVGLLASRAL
GSAGTTPVKLYGPPGLQEYVRATLRYSDTHINYPIHFQTVEPGLVLSEEGFTVLANALKHRISAFGYSVIEHDQPGRFDA
ERAAQLGIPFGPLYGQLKAGRTVALPDGRTVDGRTLVGPERKGRKLTYCSDTIYTPSAIELALGADVLIHEATYCEADLN
LAERGLHSTAAMAARVAREAKVRQLILTHFSPRYEAGLAALRTEAEAIFPNVRMAEDFWRYEIKAVEAQLPKALVEQ
>Mature_317_residues
MLLTFLGTSSGTPTRSRNVTSIALQLPQRSSLWLFDCGEGTQHQVLRTPLRLSQLEKVFFTHLHGDHLFGLVGLLASRAL
GSAGTTPVKLYGPPGLQEYVRATLRYSDTHINYPIHFQTVEPGLVLSEEGFTVLANALKHRISAFGYSVIEHDQPGRFDA
ERAAQLGIPFGPLYGQLKAGRTVALPDGRTVDGRTLVGPERKGRKLTYCSDTIYTPSAIELALGADVLIHEATYCEADLN
LAERGLHSTAAMAARVAREAKVRQLILTHFSPRYEAGLAALRTEAEAIFPNVRMAEDFWRYEIKAVEAQLPKALVEQ

Specific function: Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase Z family

Homologues:

Organism=Homo sapiens, GI8922122, Length=359, Percent_Identity=34.8189415041783, Blast_Score=206, Evalue=2e-53,
Organism=Escherichia coli, GI87082078, Length=309, Percent_Identity=44.9838187702265, Blast_Score=255, Evalue=3e-69,
Organism=Drosophila melanogaster, GI24652403, Length=279, Percent_Identity=29.7491039426523, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNZ_GLOVI (Q7NDW3)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_927065.1
- ProteinModelPortal:   Q7NDW3
- SMR:   Q7NDW3
- GeneID:   2602522
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.4119
- HOGENOM:   HBG648406
- OMA:   HSTSTMA
- BioCyc:   GVIO251221:GLR4119-MONOMER
- BRENDA:   3.1.26.11
- HAMAP:   MF_01818
- InterPro:   IPR001279
- InterPro:   IPR013471
- SMART:   SM00849
- TIGRFAMs:   TIGR02651

Pfam domain/function: PF00753 Lactamase_B

EC number: =3.1.26.11

Molecular weight: Translated: 34878; Mature: 34878

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLTFLGTSSGTPTRSRNVTSIALQLPQRSSLWLFDCGEGTQHQVLRTPLRLSQLEKVFF
CEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
THLHGDHLFGLVGLLASRALGSAGTTPVKLYGPPGLQEYVRATLRYSDTHINYPIHFQTV
HHCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEECCCEEEEEE
EPGLVLSEEGFTVLANALKHRISAFGYSVIEHDQPGRFDAERAAQLGIPFGPLYGQLKAG
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHCCC
RTVALPDGRTVDGRTLVGPERKGRKLTYCSDTIYTPSAIELALGADVLIHEATYCEADLN
CEEECCCCCEECCCEEECCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCHHHHCCCC
LAERGLHSTAAMAARVAREAKVRQLILTHFSPRYEAGLAALRTEAEAIFPNVRMAEDFWR
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YEIKAVEAQLPKALVEQ
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLTFLGTSSGTPTRSRNVTSIALQLPQRSSLWLFDCGEGTQHQVLRTPLRLSQLEKVFF
CEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
THLHGDHLFGLVGLLASRALGSAGTTPVKLYGPPGLQEYVRATLRYSDTHINYPIHFQTV
HHCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEECCCEEEEEE
EPGLVLSEEGFTVLANALKHRISAFGYSVIEHDQPGRFDAERAAQLGIPFGPLYGQLKAG
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHCCC
RTVALPDGRTVDGRTLVGPERKGRKLTYCSDTIYTPSAIELALGADVLIHEATYCEADLN
CEEECCCCCEECCCEEECCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCHHHHCCCC
LAERGLHSTAAMAARVAREAKVRQLILTHFSPRYEAGLAALRTEAEAIFPNVRMAEDFWR
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YEIKAVEAQLPKALVEQ
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14621292