Click here to switch to the map view.

The map label for this gene is yafD [C]

Identifier: 37523648

GI number: 37523648

Start: 4275461

End: 4276297

Strand: Reverse

Name: yafD [C]

Synonym: gll4079

Alternate gene names: 37523648

Gene position: 4276297-4275461 (Counterclockwise)

Preceding gene: 37523649

Following gene: 37523647

Centisome position: 91.79

GC content: 63.2

Gene sequence:

>837_bases
ATGGACGAAGATCCGACCCGGCGCTTACTAACCCAGTGGCTGCCGTCGCGGCGCTTCGAGCGTGCCCCGGAAACCATCTT
TGACGGTAGCCACGACAAGCCTGCCCACTTCGACGGCGAAGCGCTCAAAATCTTGAGCTGGAATGTCGCCAAGAGCAACC
ATGACCGCCGCTTCACCCGGGAGTTTCTGAGCATTCTCGAACGCGAGCAGCCGGATATTGTGTTTTTGCAGGAGGTGCGC
GTCGACGCCGAGACCATGCGGGCGGTAGATCTGGCGGGCATGCACTGGAGCGTGGCACCCAACTACAAAGACACCCACCT
GAACGCCTATTCCGGGTTGCTCACCGCCGCGCGGCCCGCTCCTATCGGTCAGCGCGTTGTGCTCACCCACGACACGGAGC
CATTGGCCGGCACCCCCAAAGCCTCGCTCCTCACCGAATACCCGCTACCCGGGCGCTCCCGCAAGCTGCTTGCCATCAAT
AGCCACCTCATCAACTTCGTGGATCTGCCGTCCTTCGGCGCCCAGTTAAGGCAACTCGAAGCGATTGCAAGCCGCCACCG
GGGGCCGATGGTGTTGGCGGGAGACTTCAACACCTGGAACGCGCCGCGGGTGGAGTTGCTGGAGGAAATAGCCCGCCGGT
TGGGGCTGAAGGCCGTCACCTTTGCCCCCGCCGATCGCTGGCTGGTCAAACGCTTTTTGCTCTCCGCCCCCCTCGACAAC
ATCTTCTTTCGGGGCCTCAGCGAGAAGGCGAACGCCACCCGGGTGCTCCGGCGCACCACCTGCTCCGACCACCGGCCGAT
TCTTACTGAACTGACCTGGGACGAGGAGACCGACTGA

Upstream 100 bases:

>100_bases
ATCCTGTCGCTCAACGAGTTGCTGCCTGGTTGGGAACTGGCAATTGCGGATCTGTGGCTGGTGGAATTTGACGAACTCTA
GAAGCGGGCGGCCGTTTGGC

Downstream 100 bases:

>100_bases
AATGCTCGCTCAGGAGGCGACACTTTTTAGCCTGCTGGTCCTTGCTGTCCATGGGCTGGGGATTGCCAACGCCGCCCATG
CCGTGATGCATGTGCGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MDEDPTRRLLTQWLPSRRFERAPETIFDGSHDKPAHFDGEALKILSWNVAKSNHDRRFTREFLSILEREQPDIVFLQEVR
VDAETMRAVDLAGMHWSVAPNYKDTHLNAYSGLLTAARPAPIGQRVVLTHDTEPLAGTPKASLLTEYPLPGRSRKLLAIN
SHLINFVDLPSFGAQLRQLEAIASRHRGPMVLAGDFNTWNAPRVELLEEIARRLGLKAVTFAPADRWLVKRFLLSAPLDN
IFFRGLSEKANATRVLRRTTCSDHRPILTELTWDEETD

Sequences:

>Translated_278_residues
MDEDPTRRLLTQWLPSRRFERAPETIFDGSHDKPAHFDGEALKILSWNVAKSNHDRRFTREFLSILEREQPDIVFLQEVR
VDAETMRAVDLAGMHWSVAPNYKDTHLNAYSGLLTAARPAPIGQRVVLTHDTEPLAGTPKASLLTEYPLPGRSRKLLAIN
SHLINFVDLPSFGAQLRQLEAIASRHRGPMVLAGDFNTWNAPRVELLEEIARRLGLKAVTFAPADRWLVKRFLLSAPLDN
IFFRGLSEKANATRVLRRTTCSDHRPILTELTWDEETD
>Mature_278_residues
MDEDPTRRLLTQWLPSRRFERAPETIFDGSHDKPAHFDGEALKILSWNVAKSNHDRRFTREFLSILEREQPDIVFLQEVR
VDAETMRAVDLAGMHWSVAPNYKDTHLNAYSGLLTAARPAPIGQRVVLTHDTEPLAGTPKASLLTEYPLPGRSRKLLAIN
SHLINFVDLPSFGAQLRQLEAIASRHRGPMVLAGDFNTWNAPRVELLEEIARRLGLKAVTFAPADRWLVKRFLLSAPLDN
IFFRGLSEKANATRVLRRTTCSDHRPILTELTWDEETD

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=237, Percent_Identity=31.2236286919831, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 31647; Mature: 31647

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEDPTRRLLTQWLPSRRFERAPETIFDGSHDKPAHFDGEALKILSWNVAKSNHDRRFTR
CCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
EFLSILEREQPDIVFLQEVRVDAETMRAVDLAGMHWSVAPNYKDTHLNAYSGLLTAARPA
HHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCC
PIGQRVVLTHDTEPLAGTPKASLLTEYPLPGRSRKLLAINSHLINFVDLPSFGAQLRQLE
CCCCEEEEEECCCCCCCCCCHHHEECCCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHH
AIASRHRGPMVLAGDFNTWNAPRVELLEEIARRLGLKAVTFAPADRWLVKRFLLSAPLDN
HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHCCHHH
IFFRGLSEKANATRVLRRTTCSDHRPILTELTWDEETD
HHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MDEDPTRRLLTQWLPSRRFERAPETIFDGSHDKPAHFDGEALKILSWNVAKSNHDRRFTR
CCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
EFLSILEREQPDIVFLQEVRVDAETMRAVDLAGMHWSVAPNYKDTHLNAYSGLLTAARPA
HHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCC
PIGQRVVLTHDTEPLAGTPKASLLTEYPLPGRSRKLLAINSHLINFVDLPSFGAQLRQLE
CCCCEEEEEECCCCCCCCCCHHHEECCCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHH
AIASRHRGPMVLAGDFNTWNAPRVELLEEIARRLGLKAVTFAPADRWLVKRFLLSAPLDN
HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHCCHHH
IFFRGLSEKANATRVLRRTTCSDHRPILTELTWDEETD
HHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA