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The map label for this gene is ycbY [C]

Identifier: 37523610

GI number: 37523610

Start: 4239235

End: 4240359

Strand: Direct

Name: ycbY [C]

Synonym: glr4041

Alternate gene names: 37523610

Gene position: 4239235-4240359 (Clockwise)

Preceding gene: 37523609

Following gene: 37523611

Centisome position: 90.99

GC content: 66.49

Gene sequence:

>1125_bases
GTGGAACGCTACTTTGCCACCGTCGCCCGCGGCCTCGAAGCGGTCGCCGCCGCCGAACTGGAGCGACTTGGGGCGCAGCG
GGTGGAAGCGGCCTTTGCCGGGGTGCAGTTCCGGGGGGATCGAGCGCTGCTGTATCGGGTCAACCTCTGGGCGCGCACGA
TCTTTCGGGTGCTGGCGCCCATCGCCGAATTTGCGGCACCGGACCGCGAGCGACTCTACCGGGCCGTCCAAAAAATTGAC
TGGCAGCGCTACGTGCCGGTGGAGGCGACGCTCGCGGTCGATGCCACCGGCGGCAATGCCCGGCTCAACCATACCCACTT
CACCGCCCTGCAGGTCAAAAACGCGATCGTCGATCAGCAGCGCGACCGCACGGGCAGGCGATCGAGCGTCGATGCTCACC
GGCCCGATGTGCGGCTCAACATCCACATCGACAACGATCGCGCCGTGCTCAGTCTCGACAGTTCCGGCGAGAGCCTGCAC
CGGCGGGGCTACCGCCCGGCGATGGGGGCGGCGCCCCTCAAAGAAACCCTGGCCGCGGCCCTTATCGAGCTTGCCGGCTG
GGATCCCGCCCAGGCGTTTGTCGATCCGCTCTGCGGTTCCGGAACGCTGCCGCTCGAAGCGGCCACCAAAGCGCTCGCCA
TTGCTCCGGGCTTGTTTCGCGACCGTTTCGGCTTCGAGGGCTGGCCGGACTTTGACCAACCGCTGTGGGAAAGCCTGCGC
GCCGAGGCGAAGTCCATGCAGCGCACCCAATTGTCTGCACCGATAGCAGGCAGCGACAGCGATGTGGAGGTGTTGCAACT
GGCCAGGGAGAACGCCCGCCGCTGCGGGGTCGAAAAACTCGTCACCTGGAGCGCCACCGAACTTGCGCACCTCGAAGCGC
CGAGCGACCGGGGTGTCATCCTCTGCAACCCGCCCTACGGCGAGCGCCTCGGGGAGGCATCGGCGTTGGGCGAACTCTAT
TCCAGCCTTGGCGACGTGTTCAAACAGCGATTCAAAGGCTGGCAAGCGGGCATTCTGACCGGCAACCGCGAACTGGCCAA
GCAGATCGGCCTGCGCCCTTCGCGCCGTCTGCCGGTGTTCAACGGGTCGCTGGCGTGCACCCTTTTGCTCTACGAGCTGT
ACTGA

Upstream 100 bases:

>100_bases
GCAAACCCCGGGCGGCCAAATTGCGCGATCTCGAAGCGAAAAAACGCCGCTCCGCCATCAAGCGCGCCCGCTCCGGCCGC
GATCTGGCCGAATAGACGCT

Downstream 100 bases:

>100_bases
AAAGCCCGACAGCTATGCAACCGGAAGGAGAAAGCATTGTGTCCATCGGCAGAGGGGATAGCTGCCTTCTGAGCACTAAC
TTTGACTCACGAACTCGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MERYFATVARGLEAVAAAELERLGAQRVEAAFAGVQFRGDRALLYRVNLWARTIFRVLAPIAEFAAPDRERLYRAVQKID
WQRYVPVEATLAVDATGGNARLNHTHFTALQVKNAIVDQQRDRTGRRSSVDAHRPDVRLNIHIDNDRAVLSLDSSGESLH
RRGYRPAMGAAPLKETLAAALIELAGWDPAQAFVDPLCGSGTLPLEAATKALAIAPGLFRDRFGFEGWPDFDQPLWESLR
AEAKSMQRTQLSAPIAGSDSDVEVLQLARENARRCGVEKLVTWSATELAHLEAPSDRGVILCNPPYGERLGEASALGELY
SSLGDVFKQRFKGWQAGILTGNRELAKQIGLRPSRRLPVFNGSLACTLLLYELY

Sequences:

>Translated_374_residues
MERYFATVARGLEAVAAAELERLGAQRVEAAFAGVQFRGDRALLYRVNLWARTIFRVLAPIAEFAAPDRERLYRAVQKID
WQRYVPVEATLAVDATGGNARLNHTHFTALQVKNAIVDQQRDRTGRRSSVDAHRPDVRLNIHIDNDRAVLSLDSSGESLH
RRGYRPAMGAAPLKETLAAALIELAGWDPAQAFVDPLCGSGTLPLEAATKALAIAPGLFRDRFGFEGWPDFDQPLWESLR
AEAKSMQRTQLSAPIAGSDSDVEVLQLARENARRCGVEKLVTWSATELAHLEAPSDRGVILCNPPYGERLGEASALGELY
SSLGDVFKQRFKGWQAGILTGNRELAKQIGLRPSRRLPVFNGSLACTLLLYELY
>Mature_374_residues
MERYFATVARGLEAVAAAELERLGAQRVEAAFAGVQFRGDRALLYRVNLWARTIFRVLAPIAEFAAPDRERLYRAVQKID
WQRYVPVEATLAVDATGGNARLNHTHFTALQVKNAIVDQQRDRTGRRSSVDAHRPDVRLNIHIDNDRAVLSLDSSGESLH
RRGYRPAMGAAPLKETLAAALIELAGWDPAQAFVDPLCGSGTLPLEAATKALAIAPGLFRDRFGFEGWPDFDQPLWESLR
AEAKSMQRTQLSAPIAGSDSDVEVLQLARENARRCGVEKLVTWSATELAHLEAPSDRGVILCNPPYGERLGEASALGELY
SSLGDVFKQRFKGWQAGILTGNRELAKQIGLRPSRRLPVFNGSLACTLLLYELY

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=379, Percent_Identity=40.1055408970976, Blast_Score=270, Evalue=1e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 41288; Mature: 41288

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERYFATVARGLEAVAAAELERLGAQRVEAAFAGVQFRGDRALLYRVNLWARTIFRVLAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCEEEEEEHHHHHHHHHHHHHH
IAEFAAPDRERLYRAVQKIDWQRYVPVEATLAVDATGGNARLNHTHFTALQVKNAIVDQQ
HHHHCCCCHHHHHHHHHHCCCHHCCCEEEEEEEECCCCCCEECCCHHHHHHHHHHHHHHH
RDRTGRRSSVDAHRPDVRLNIHIDNDRAVLSLDSSGESLHRRGYRPAMGAAPLKETLAAA
HHCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHH
LIELAGWDPAQAFVDPLCGSGTLPLEAATKALAIAPGLFRDRFGFEGWPDFDQPLWESLR
HHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHH
AEAKSMQRTQLSAPIAGSDSDVEVLQLARENARRCGVEKLVTWSATELAHLEAPSDRGVI
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCHHHHEECCCCCCCEE
LCNPPYGERLGEASALGELYSSLGDVFKQRFKGWQAGILTGNRELAKQIGLRPSRRLPVF
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCCCCCCCC
NGSLACTLLLYELY
CCCHHHHHHHHHCC
>Mature Secondary Structure
MERYFATVARGLEAVAAAELERLGAQRVEAAFAGVQFRGDRALLYRVNLWARTIFRVLAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCEEEEEEHHHHHHHHHHHHHH
IAEFAAPDRERLYRAVQKIDWQRYVPVEATLAVDATGGNARLNHTHFTALQVKNAIVDQQ
HHHHCCCCHHHHHHHHHHCCCHHCCCEEEEEEEECCCCCCEECCCHHHHHHHHHHHHHHH
RDRTGRRSSVDAHRPDVRLNIHIDNDRAVLSLDSSGESLHRRGYRPAMGAAPLKETLAAA
HHCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHH
LIELAGWDPAQAFVDPLCGSGTLPLEAATKALAIAPGLFRDRFGFEGWPDFDQPLWESLR
HHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHH
AEAKSMQRTQLSAPIAGSDSDVEVLQLARENARRCGVEKLVTWSATELAHLEAPSDRGVI
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCHHHHEECCCCCCCEE
LCNPPYGERLGEASALGELYSSLGDVFKQRFKGWQAGILTGNRELAKQIGLRPSRRLPVF
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCCCCCCCC
NGSLACTLLLYELY
CCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]