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The map label for this gene is ykfC [H]

Identifier: 37523573

GI number: 37523573

Start: 4208892

End: 4209833

Strand: Reverse

Name: ykfC [H]

Synonym: gll4004

Alternate gene names: 37523573

Gene position: 4209833-4208892 (Counterclockwise)

Preceding gene: 37523574

Following gene: 37523572

Centisome position: 90.36

GC content: 67.62

Gene sequence:

>942_bases
GTGCTAAAAGCCGGGGCCACCTGGCAAAGGGGGCGCATCGTGCTGGTGGGCCGCGCCCTCGAAGCGCGCGACCGGGCGGC
GCTCGAAGCGGCTTTTTCCCGTCTCGGTCCGGTGGATAACCGTATGGAAATTTTTCCGTTCAAAGCAATGGGCGCGCGGG
CCTGGGGGGCAGTGCGCTCCTCGGGAACGGACCTGCGCGCCGAACCGGACGCCGGATCCGAACTGGTTTCCCAGGCGCTG
CCCGGCGACACGCTCAAAGTGCTTGCGCGCAGTGGCGACGGGCGCTGGTACCAAATTTTGCGCGAGTGGGACGGCTACGT
GGGCTGGATTCCCGCCGAGCGGGCGGTGCTGTGGACCGGTGCCGAGCGGCAGACCTGGCAATCGGCACCGCGCTCAATGC
TCATGCGCTCGCTGCCCGGTTTGCCGCGCGGCAGCATCGTCGCAGGTGCCGACGGCCTGCGCGGGCGCACTGCCGAGGGC
CGGGAAGTGACAATTCCAAGTGAGGCCTTGCGCCGCATCGAACCTGGCGAGGTACCCACAGCGGCGCGGGTCGTCGAGTT
GGCCCGGGTGCTGCTGGCCGATCAGCCCACCCGCTACCTCTGGGGGGGCACGCTCGACCGCGCCCTCGACTGCAGCGGCT
TCAATCAAACCGTCTACCGGATGGCCGGGGGGGCGATCCCCAGAGACTCCTACCAGCAGCAGGCGGCCAGTCGGCCGGTG
GCACCGCGCGCCGAAGACTGGCAGAAGCTGGAGCCCGGGGATTTGCTGTTTTTTAGTGAGAAGCGCAGCCGCGCCACCCA
CACCGGTATTTACGTGGGCGACGGCCGCTTCGTCCATGCTTCGAGTCACAACCAGGGCATCGCCGAAAATTACCTGATGG
GCGAGAGCGAATACGAGCGCTTCTTGCGGCGGATCTACTTCGGCGCCGGACGGGTGGTCTAG

Upstream 100 bases:

>100_bases
CTTGGGGATTTTAGCCATCCCGGCTGGGGCGGCTCCGGCCCTGGGGCCGACCATTGAGCGCTACGCGGCCACCTTGCCCG
GAGGCTACGGCGCGCGGGCG

Downstream 100 bases:

>100_bases
ACACCCGATGGATCTTCAGGCTGAAAAACGTTCGATCGAAGCTATCTACCAGGAGCGTTTGGAGCGCTTCGGTGCGGCGC
GGCGGCTGTACGAGCGGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: Cell wall endopeptidase ykfC [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLKAGATWQRGRIVLVGRALEARDRAALEAAFSRLGPVDNRMEIFPFKAMGARAWGAVRSSGTDLRAEPDAGSELVSQAL
PGDTLKVLARSGDGRWYQILREWDGYVGWIPAERAVLWTGAERQTWQSAPRSMLMRSLPGLPRGSIVAGADGLRGRTAEG
REVTIPSEALRRIEPGEVPTAARVVELARVLLADQPTRYLWGGTLDRALDCSGFNQTVYRMAGGAIPRDSYQQQAASRPV
APRAEDWQKLEPGDLLFFSEKRSRATHTGIYVGDGRFVHASSHNQGIAENYLMGESEYERFLRRIYFGAGRVV

Sequences:

>Translated_313_residues
MLKAGATWQRGRIVLVGRALEARDRAALEAAFSRLGPVDNRMEIFPFKAMGARAWGAVRSSGTDLRAEPDAGSELVSQAL
PGDTLKVLARSGDGRWYQILREWDGYVGWIPAERAVLWTGAERQTWQSAPRSMLMRSLPGLPRGSIVAGADGLRGRTAEG
REVTIPSEALRRIEPGEVPTAARVVELARVLLADQPTRYLWGGTLDRALDCSGFNQTVYRMAGGAIPRDSYQQQAASRPV
APRAEDWQKLEPGDLLFFSEKRSRATHTGIYVGDGRFVHASSHNQGIAENYLMGESEYERFLRRIYFGAGRVV
>Mature_313_residues
MLKAGATWQRGRIVLVGRALEARDRAALEAAFSRLGPVDNRMEIFPFKAMGARAWGAVRSSGTDLRAEPDAGSELVSQAL
PGDTLKVLARSGDGRWYQILREWDGYVGWIPAERAVLWTGAERQTWQSAPRSMLMRSLPGLPRGSIVAGADGLRGRTAEG
REVTIPSEALRRIEPGEVPTAARVVELARVLLADQPTRYLWGGTLDRALDCSGFNQTVYRMAGGAIPRDSYQQQAASRPV
APRAEDWQKLEPGDLLFFSEKRSRATHTGIYVGDGRFVHASSHNQGIAENYLMGESEYERFLRRIYFGAGRVV

Specific function: Specifically hydrolyzes gamma-D-glutamyl-L-lysine bonds in murein peptides, releasing L-Ala-D-Glu [H]

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 34559; Mature: 34559

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKAGATWQRGRIVLVGRALEARDRAALEAAFSRLGPVDNRMEIFPFKAMGARAWGAVRS
CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCHHHHHHHC
SGTDLRAEPDAGSELVSQALPGDTLKVLARSGDGRWYQILREWDGYVGWIPAERAVLWTG
CCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCEEEEEC
AERQTWQSAPRSMLMRSLPGLPRGSIVAGADGLRGRTAEGREVTIPSEALRRIEPGEVPT
CCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCEEECCHHHHHCCCCCCCCH
AARVVELARVLLADQPTRYLWGGTLDRALDCSGFNQTVYRMAGGAIPRDSYQQQAASRPV
HHHHHHHHHHHHCCCCCCEECCCCHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCC
APRAEDWQKLEPGDLLFFSEKRSRATHTGIYVGDGRFVHASSHNQGIAENYLMGESEYER
CCCCHHHHCCCCCCEEEEECCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHCCCHHHHH
FLRRIYFGAGRVV
HHHHHHHCCCCCC
>Mature Secondary Structure
MLKAGATWQRGRIVLVGRALEARDRAALEAAFSRLGPVDNRMEIFPFKAMGARAWGAVRS
CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCHHHHHHHC
SGTDLRAEPDAGSELVSQALPGDTLKVLARSGDGRWYQILREWDGYVGWIPAERAVLWTG
CCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCEEEEEC
AERQTWQSAPRSMLMRSLPGLPRGSIVAGADGLRGRTAEGREVTIPSEALRRIEPGEVPT
CCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCEEECCHHHHHCCCCCCCCH
AARVVELARVLLADQPTRYLWGGTLDRALDCSGFNQTVYRMAGGAIPRDSYQQQAASRPV
HHHHHHHHHHHHCCCCCCEECCCCHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCC
APRAEDWQKLEPGDLLFFSEKRSRATHTGIYVGDGRFVHASSHNQGIAENYLMGESEYER
CCCCHHHHCCCCCCEEEEECCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHCCCHHHHH
FLRRIYFGAGRVV
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]