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The map label for this gene is deoC

Identifier: 37523107

GI number: 37523107

Start: 3737025

End: 3737705

Strand: Reverse

Name: deoC

Synonym: gll3538

Alternate gene names: 37523107

Gene position: 3737705-3737025 (Counterclockwise)

Preceding gene: 37523111

Following gene: 37523106

Centisome position: 80.23

GC content: 62.85

Gene sequence:

>681_bases
ATGATTAGCAGCCATCCCGAAATCGAACTGGCCGGATTTATCGAGCAGACTTGCCTCAAACCGACCGCCACCGCAGACGA
TGTTCGCCAGATGTGTTGGGAGGCGCAGCGGTACCGCTTTGCCGCAGTCTGCGTAGCACCGGTGTACGCGCCTTTGGCCG
TCGAATTGCTGCACAAGCAAAAACCCCAGGTCTTCACGGTCGTCGGTTTTCCGCTGGGACTGGCCACCGCCCCCTGCAAG
CTTTTCGAAGCGCAGGAGGCGGCGGCGAGGGGGGTGACGGGCCTGGAGGTGATGGTCAACCTGGGGGCGATCAAATCCGG
CCACTACAACGCCATCTACGAAGAACTCGGTCAGATCGTCGATGCGGTCGGCTGTGAGGTGCGGGCGATTCTGGAGTTGA
ACTTGCTGGATGCAACCGAGCGCCGGCACGTCGCCGAGGTGTGTCTCGATGTCGGAGTCACTGCCCTGAAGACCTCCGCC
GGTTGGTCGGGTCCGGTGCGGCCCGAAGATATTTTGGGTCTGCGGCGCATTCTGCGCAACCAGTTGGGGATCAAAGTGGC
GGGCGGTATCCACACCCTGAACCAGGCCCTCGAACTGCTGGCTGCCGGGGCAAACCGCCTGGGCACCGGTCGGGGGGTCG
AGATCCTGCGCGAACAGCACGCCCTTGGTAAGACGGCGTGA

Upstream 100 bases:

>100_bases
TTGCGCCATCGCCGCACCTTTGATAGCTGTCTACAGAATAGCGCTGTGTACCATTCGGAGAAACTGGGGGTATTCTGTGG
AGAAATTTGGACCGCGAACG

Downstream 100 bases:

>100_bases
CGTACCCTCGAAGAAGACGCTCGAGATAGAGGCTGGGGGTGAAACGGTTTTTGGCGCCGCTTGGCGGGGTGGTCGGCATC
CTGGAGCGCTGGCTGCTCTA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MISSHPEIELAGFIEQTCLKPTATADDVRQMCWEAQRYRFAAVCVAPVYAPLAVELLHKQKPQVFTVVGFPLGLATAPCK
LFEAQEAAARGVTGLEVMVNLGAIKSGHYNAIYEELGQIVDAVGCEVRAILELNLLDATERRHVAEVCLDVGVTALKTSA
GWSGPVRPEDILGLRRILRNQLGIKVAGGIHTLNQALELLAAGANRLGTGRGVEILREQHALGKTA

Sequences:

>Translated_226_residues
MISSHPEIELAGFIEQTCLKPTATADDVRQMCWEAQRYRFAAVCVAPVYAPLAVELLHKQKPQVFTVVGFPLGLATAPCK
LFEAQEAAARGVTGLEVMVNLGAIKSGHYNAIYEELGQIVDAVGCEVRAILELNLLDATERRHVAEVCLDVGVTALKTSA
GWSGPVRPEDILGLRRILRNQLGIKVAGGIHTLNQALELLAAGANRLGTGRGVEILREQHALGKTA
>Mature_226_residues
MISSHPEIELAGFIEQTCLKPTATADDVRQMCWEAQRYRFAAVCVAPVYAPLAVELLHKQKPQVFTVVGFPLGLATAPCK
LFEAQEAAARGVTGLEVMVNLGAIKSGHYNAIYEELGQIVDAVGCEVRAILELNLLDATERRHVAEVCLDVGVTALKTSA
GWSGPVRPEDILGLRRILRNQLGIKVAGGIHTLNQALELLAAGANRLGTGRGVEILREQHALGKTA

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_GLOVI (Q7NFI7)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_926484.1
- ProteinModelPortal:   Q7NFI7
- SMR:   Q7NFI7
- GeneID:   2601942
- GenomeReviews:   BA000045_GR
- KEGG:   gvi:gll3538
- NMPDR:   fig|251221.1.peg.3538
- HOGENOM:   HBG636421
- OMA:   GANTPEV
- ProtClustDB:   PRK00507
- BioCyc:   GVIO251221:GLL3538-MONOMER
- BRENDA:   4.1.2.4
- GO:   GO:0005737
- HAMAP:   MF_00114
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 24268; Mature: 24268

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: ACT_SITE 157-157 ACT_SITE 185-185

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSHPEIELAGFIEQTCLKPTATADDVRQMCWEAQRYRFAAVCVAPVYAPLAVELLHKQ
CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KPQVFTVVGFPLGLATAPCKLFEAQEAAARGVTGLEVMVNLGAIKSGHYNAIYEELGQIV
CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH
DAVGCEVRAILELNLLDATERRHVAEVCLDVGVTALKTSAGWSGPVRPEDILGLRRILRN
HHHCCCCEEHHEEHHHCHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHH
QLGIKVAGGIHTLNQALELLAAGANRLGTGRGVEILREQHALGKTA
HCCEEEECHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MISSHPEIELAGFIEQTCLKPTATADDVRQMCWEAQRYRFAAVCVAPVYAPLAVELLHKQ
CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KPQVFTVVGFPLGLATAPCKLFEAQEAAARGVTGLEVMVNLGAIKSGHYNAIYEELGQIV
CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH
DAVGCEVRAILELNLLDATERRHVAEVCLDVGVTALKTSAGWSGPVRPEDILGLRRILRN
HHHCCCCEEHHEEHHHCHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHH
QLGIKVAGGIHTLNQALELLAAGANRLGTGRGVEILREQHALGKTA
HCCEEEECHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14621292