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The map label for this gene is radC [C]

Identifier: 37523034

GI number: 37523034

Start: 3674643

End: 3675371

Strand: Reverse

Name: radC [C]

Synonym: gvip472

Alternate gene names: 37523034

Gene position: 3675371-3674643 (Counterclockwise)

Preceding gene: 37523035

Following gene: 37523033

Centisome position: 78.89

GC content: 69.55

Gene sequence:

>729_bases
ATGCTGCCTGCCATGCATACGCCGCGCATTGCCGAATTGCCCATTGCCGAACGCCCCCGCGAACGCCTGCTGACCCATGG
CGCGCGGGGACTGGCCACCGCCGAACTGCTTGCGGTGCTCTTCGGCGGCGGCCAGGCCGCTGTGCGCTTGAGCGCTCTGG
GGCTTGCCCAGCAGGTGCTGCACACCCTCGGTCGCGCCGGGGGCGAACCACTGGTGCACCTGCGCGATGTGAGCGCGGCG
GAGTTGATGCTGCAGCCGGGGGTCGGTCCGGCCCGAGCGGCGGCGGTGCTTGCGGCCATCGAACTTGGGCGGCGGGTGTT
CGTGGTCCGCAGCAGCGGGGAGCGACCGGTGATCGACGGGCCGCAGGCGGTGGCGGCGGTACTCGGGGGCGAACTGGCTT
TTGCCCGCCAGGAGCAGTTCGCGGTGCTGCTGCTCGATGTCAAAAACCGGCTCATCGCCCACCGGATTGTGAGCGTCGGC
ACGATCGACGAGACCCTCGCCCATCCGCGCGAAATCTTTCGCGAGGCGATCCGTCAGGGGGCGGCGGGGATCATCGTCGC
CCACAACCACCCGTCCGGGGTGACCGAACCTTCGCCAGAGGATCTGCGCCTCACCGGGCAACTGATCGAGTGCGGTCGCA
CCCTGCAAATTCCCGTGCTGGATCACGTCATCCTCGGCCAGGGCAACTTCACGAGCCTCCGGCGGCTCACCGCCCTGTGG
CGGGCGTGA

Upstream 100 bases:

>100_bases
AATCCACCCGTGCCGCCCCCGGCAAGAACGTTCTTTTTTGATGCCGTGCGGTCTTGTGCGGCGAGGCGGGGCGGCTCGCC
CGAGGTGCAGGCGGGGCAGT

Downstream 100 bases:

>100_bases
GCGGTGTGCGCACTCGCCTTGCTTTCGGCCAGTCTCTGCACTTACTATGAGCGTGACCGGGGCAAAAACTCCGTAGGCGG
GGGCGCGCAGGACCGAGGTT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MLPAMHTPRIAELPIAERPRERLLTHGARGLATAELLAVLFGGGQAAVRLSALGLAQQVLHTLGRAGGEPLVHLRDVSAA
ELMLQPGVGPARAAAVLAAIELGRRVFVVRSSGERPVIDGPQAVAAVLGGELAFARQEQFAVLLLDVKNRLIAHRIVSVG
TIDETLAHPREIFREAIRQGAAGIIVAHNHPSGVTEPSPEDLRLTGQLIECGRTLQIPVLDHVILGQGNFTSLRRLTALW
RA

Sequences:

>Translated_242_residues
MLPAMHTPRIAELPIAERPRERLLTHGARGLATAELLAVLFGGGQAAVRLSALGLAQQVLHTLGRAGGEPLVHLRDVSAA
ELMLQPGVGPARAAAVLAAIELGRRVFVVRSSGERPVIDGPQAVAAVLGGELAFARQEQFAVLLLDVKNRLIAHRIVSVG
TIDETLAHPREIFREAIRQGAAGIIVAHNHPSGVTEPSPEDLRLTGQLIECGRTLQIPVLDHVILGQGNFTSLRRLTALW
RA
>Mature_242_residues
MLPAMHTPRIAELPIAERPRERLLTHGARGLATAELLAVLFGGGQAAVRLSALGLAQQVLHTLGRAGGEPLVHLRDVSAA
ELMLQPGVGPARAAAVLAAIELGRRVFVVRSSGERPVIDGPQAVAAVLGGELAFARQEQFAVLLLDVKNRLIAHRIVSVG
TIDETLAHPREIFREAIRQGAAGIIVAHNHPSGVTEPSPEDLRLTGQLIECGRTLQIPVLDHVILGQGNFTSLRRLTALW
RA

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=215, Percent_Identity=34.8837209302326, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI2367100, Length=105, Percent_Identity=44.7619047619048, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788997, Length=105, Percent_Identity=40.9523809523809, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1788312, Length=97, Percent_Identity=40.2061855670103, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466; PF00633 HHH [H]

EC number: NA

Molecular weight: Translated: 25784; Mature: 25784

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPAMHTPRIAELPIAERPRERLLTHGARGLATAELLAVLFGGGQAAVRLSALGLAQQVL
CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
HTLGRAGGEPLVHLRDVSAAELMLQPGVGPARAAAVLAAIELGRRVFVVRSSGERPVIDG
HHHHHCCCCCEEEEECCCHHHHEECCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCC
PQAVAAVLGGELAFARQEQFAVLLLDVKNRLIAHRIVSVGTIDETLAHPREIFREAIRQG
HHHHHHHHCCHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
AAGIIVAHNHPSGVTEPSPEDLRLTGQLIECGRTLQIPVLDHVILGQGNFTSLRRLTALW
CCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEECCHHHEEEECCCCHHHHHHHHHHH
RA
CC
>Mature Secondary Structure
MLPAMHTPRIAELPIAERPRERLLTHGARGLATAELLAVLFGGGQAAVRLSALGLAQQVL
CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
HTLGRAGGEPLVHLRDVSAAELMLQPGVGPARAAAVLAAIELGRRVFVVRSSGERPVIDG
HHHHHCCCCCEEEEECCCHHHHEECCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCC
PQAVAAVLGGELAFARQEQFAVLLLDVKNRLIAHRIVSVGTIDETLAHPREIFREAIRQG
HHHHHHHHCCHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
AAGIIVAHNHPSGVTEPSPEDLRLTGQLIECGRTLQIPVLDHVILGQGNFTSLRRLTALW
CCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEECCHHHEEEECCCCHHHHHHHHHHH
RA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA