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The map label for this gene is cpcC [H]

Identifier: 37522788

GI number: 37522788

Start: 3425928

End: 3426587

Strand: Reverse

Name: cpcC [H]

Synonym: gvip445

Alternate gene names: 37522788

Gene position: 3426587-3425928 (Counterclockwise)

Preceding gene: 37522790

Following gene: 37522785

Centisome position: 73.55

GC content: 57.42

Gene sequence:

>660_bases
ATGACCTACATCAAGAACAAGGGCGGTCGTGTCCTCGACATTTCCCCGGCGGATCTCGAGGCCCTGGGACCTCCCGACAT
CAGCTCGGTGGCCATTCCCCTCAAAGTCGAACTGTGGGCGAAAGCCGACGTCTCGGATGTACAAGCAGCGATTGTGGCGG
CCTACAAGCAGATCTTCGGCAACACCTATGTGCTCGAAAGCGAGCGGCTCACCTCCGCCGAGTCGCTGCTGCGCAATGGT
TCGATCAGTGTGCGCGAGTTCGTGCGGCTTCTGGCCAAATCCGAACTGTACAAGGAACGCTTTTTCTTTTGCACCTCCAA
CAACCGCTTTACCGAACTGAACTTCAAACATTTTTTGGGCCGCGCCCCTTACAACCAGTCGGAGATCGCCGCGCACCTCG
ACCGCTACCAGACGTTCGGTTACGACGCGGAGATCGATTCTTACATCGATAGTGACGAGTACATTCAGGCCTTCGGCGAA
AATGTCGTTCCCTACTATCGTGGCTTCAAGTCCCAGTCCGGCCAGACCGTAGAGAGCTTTAACCGGATGTTCAAACTCTA
TCGCGGCGACGCCGGCAGCGACACCAACCTGAACCTGCAGGGCCAGAAGCGTCGGGTCGATCCCAAAAACCTGCTTCGCT
CCGGCCGCGGCATCGTCTGA

Upstream 100 bases:

>100_bases
TCCGGCGCTGTCGCACCACCCCTGGCCGAGCCTCGACACCTACGAGCCGAGCCAGAACAGCTACAGCGTCGTGGTGCCCC
TCGACCGGCTGCTGGCCGAG

Downstream 100 bases:

>100_bases
GGATCAACAACCGCCGTCAATAAATCGCCGGGAAGGCGGACTTTCCCGGCGATTTTTGTCGATTGGTTTCAATCAAAAAG
GGCAGGCGCAATGCATCGCC

Product: phycocyanin-associated rod linker protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTYIKNKGGRVLDISPADLEALGPPDISSVAIPLKVELWAKADVSDVQAAIVAAYKQIFGNTYVLESERLTSAESLLRNG
SISVREFVRLLAKSELYKERFFFCTSNNRFTELNFKHFLGRAPYNQSEIAAHLDRYQTFGYDAEIDSYIDSDEYIQAFGE
NVVPYYRGFKSQSGQTVESFNRMFKLYRGDAGSDTNLNLQGQKRRVDPKNLLRSGRGIV

Sequences:

>Translated_219_residues
MTYIKNKGGRVLDISPADLEALGPPDISSVAIPLKVELWAKADVSDVQAAIVAAYKQIFGNTYVLESERLTSAESLLRNG
SISVREFVRLLAKSELYKERFFFCTSNNRFTELNFKHFLGRAPYNQSEIAAHLDRYQTFGYDAEIDSYIDSDEYIQAFGE
NVVPYYRGFKSQSGQTVESFNRMFKLYRGDAGSDTNLNLQGQKRRVDPKNLLRSGRGIV
>Mature_218_residues
TYIKNKGGRVLDISPADLEALGPPDISSVAIPLKVELWAKADVSDVQAAIVAAYKQIFGNTYVLESERLTSAESLLRNGS
ISVREFVRLLAKSELYKERFFFCTSNNRFTELNFKHFLGRAPYNQSEIAAHLDRYQTFGYDAEIDSYIDSDEYIQAFGEN
VVPYYRGFKSQSGQTVESFNRMFKLYRGDAGSDTNLNLQGQKRRVDPKNLLRSGRGIV

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- ProDom:   PD000852 [H]

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 24795; Mature: 24664

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYIKNKGGRVLDISPADLEALGPPDISSVAIPLKVELWAKADVSDVQAAIVAAYKQIFG
CCCEECCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHC
NTYVLESERLTSAESLLRNGSISVREFVRLLAKSELYKERFFFCTSNNRFTELNFKHFLG
CEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCEEEECHHHHHC
RAPYNQSEIAAHLDRYQTFGYDAEIDSYIDSDEYIQAFGENVVPYYRGFKSQSGQTVESF
CCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHCCCCCHHHHCCCCCCCCHHHHH
NRMFKLYRGDAGSDTNLNLQGQKRRVDPKNLLRSGRGIV
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure 
TYIKNKGGRVLDISPADLEALGPPDISSVAIPLKVELWAKADVSDVQAAIVAAYKQIFG
CCEECCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHC
NTYVLESERLTSAESLLRNGSISVREFVRLLAKSELYKERFFFCTSNNRFTELNFKHFLG
CEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCEEEECHHHHHC
RAPYNQSEIAAHLDRYQTFGYDAEIDSYIDSDEYIQAFGENVVPYYRGFKSQSGQTVESF
CCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHCCCCCHHHHCCCCCCCCHHHHH
NRMFKLYRGDAGSDTNLNLQGQKRRVDPKNLLRSGRGIV
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3933528 [H]