Click here to switch to the map view.

The map label for this gene is degU [H]

Identifier: 37522644

GI number: 37522644

Start: 3273506

End: 3274204

Strand: Direct

Name: degU [H]

Synonym: glr3075

Alternate gene names: 37522644

Gene position: 3273506-3274204 (Clockwise)

Preceding gene: 37522643

Following gene: 37522645

Centisome position: 70.26

GC content: 57.8

Gene sequence:

>699_bases
ATGTCTCGTTCAGCCACGGAACATGACAGCGCCAGGGTTGCGGTCATATCCGATCACCCGCTTACTGCGTATGCACTCAA
AAAGCTTATTGAGGAATGCACACCGTTGGATCTGGTTCTGCATGTAACCACCGGCTCGGTTAGCCGCGAAATATTTACGC
AGACTCCTATCGACTTTGTCGTCTTTGAGGTGCGCTCTGTCGGACCTTTCGAGCATCAGATTGTTCAGAATCTGCGAGCC
TGGTCTCCGCAGCTGCGTCTGCTGGTGGTACTTTTGTCTGCGAACCTTGAAGAGGCGGCCAGGTTCATTGAATCGGGGGC
CGATAGCCTCTGGACTGAGCAATCTTCGGTTTCGGTTCTGCTGCGGGCGATGCGCAAGACTACCCTGGGACAGCGGTGGG
TGGATCCGGCCTGCGAGGTTACCTCCACGCTGCTTGAATCGAACCGATCGCCCCAGGTCGCTGCCGCGCCGGTGGTTCCA
GGCCACCGCGCCGGGGTCACCCAGGCCGTAGCGCTCTCCCGTCGCGAGCGCGAGATTCTGCAACTGATTCAGCAGGGCCT
TTCTAATCAGCAGATTGCCGATCATCTCTATTTAAGCGTCAACACCGTCAAAAACCATATGAGCCGCATCTTTACCAAGC
TCAGCGCCACCAACCGCACCCAGGCGGTGCTCAAGGCGATGGGCACCGGCCGCGAATAG

Upstream 100 bases:

>100_bases
GTCGGTTCAGTTCACTTCGAAAGGAGGAGTCTAAACATTGTCATCTACGGAATAATCTATTTATCTATCCGCAATCGACA
CGAGCCAATGGAGTCACACT

Downstream 100 bases:

>100_bases
GTAAGGGTTTGTGCGTGCTAAGCTGACCCTCTATGCATCGCACTTCGGCAGCGGCGGGCGGTTGGGAACCGCAGGGCGAG
GCGACCACCCTGATGGAGCA

Product: LuxR family transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSRSATEHDSARVAVISDHPLTAYALKKLIEECTPLDLVLHVTTGSVSREIFTQTPIDFVVFEVRSVGPFEHQIVQNLRA
WSPQLRLLVVLLSANLEEAARFIESGADSLWTEQSSVSVLLRAMRKTTLGQRWVDPACEVTSTLLESNRSPQVAAAPVVP
GHRAGVTQAVALSRREREILQLIQQGLSNQQIADHLYLSVNTVKNHMSRIFTKLSATNRTQAVLKAMGTGRE

Sequences:

>Translated_232_residues
MSRSATEHDSARVAVISDHPLTAYALKKLIEECTPLDLVLHVTTGSVSREIFTQTPIDFVVFEVRSVGPFEHQIVQNLRA
WSPQLRLLVVLLSANLEEAARFIESGADSLWTEQSSVSVLLRAMRKTTLGQRWVDPACEVTSTLLESNRSPQVAAAPVVP
GHRAGVTQAVALSRREREILQLIQQGLSNQQIADHLYLSVNTVKNHMSRIFTKLSATNRTQAVLKAMGTGRE
>Mature_231_residues
SRSATEHDSARVAVISDHPLTAYALKKLIEECTPLDLVLHVTTGSVSREIFTQTPIDFVVFEVRSVGPFEHQIVQNLRAW
SPQLRLLVVLLSANLEEAARFIESGADSLWTEQSSVSVLLRAMRKTTLGQRWVDPACEVTSTLLESNRSPQVAAAPVVPG
HRAGVTQAVALSRREREILQLIQQGLSNQQIADHLYLSVNTVKNHMSRIFTKLSATNRTQAVLKAMGTGRE

Specific function: Regulating factor for the production of extracellular proteases. The N-terminal region acts as an inhibitor, whereas the C-terminal region carries enhancing activity [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 25646; Mature: 25514

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSATEHDSARVAVISDHPLTAYALKKLIEECTPLDLVLHVTTGSVSREIFTQTPIDFV
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCHHHH
VFEVRSVGPFEHQIVQNLRAWSPQLRLLVVLLSANLEEAARFIESGADSLWTEQSSVSVL
HHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCHHHHHHH
LRAMRKTTLGQRWVDPACEVTSTLLESNRSPQVAAAPVVPGHRAGVTQAVALSRREREIL
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHH
QLIQQGLSNQQIADHLYLSVNTVKNHMSRIFTKLSATNRTQAVLKAMGTGRE
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SRSATEHDSARVAVISDHPLTAYALKKLIEECTPLDLVLHVTTGSVSREIFTQTPIDFV
CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCHHHH
VFEVRSVGPFEHQIVQNLRAWSPQLRLLVVLLSANLEEAARFIESGADSLWTEQSSVSVL
HHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCHHHHHHH
LRAMRKTTLGQRWVDPACEVTSTLLESNRSPQVAAAPVVPGHRAGVTQAVALSRREREIL
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHH
QLIQQGLSNQQIADHLYLSVNTVKNHMSRIFTKLSATNRTQAVLKAMGTGRE
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7765823 [H]