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The map label for this gene is yebA [H]

Identifier: 37522544

GI number: 37522544

Start: 3173693

End: 3174604

Strand: Reverse

Name: yebA [H]

Synonym: gll2975

Alternate gene names: 37522544

Gene position: 3174604-3173693 (Counterclockwise)

Preceding gene: 37522545

Following gene: 37522543

Centisome position: 68.14

GC content: 70.39

Gene sequence:

>912_bases
ATGCGCCGCGGGCTTGCTGGGACGGCCGTGGCCGTCGGGCTATGGGCGCTGACGGCTGGACCCGCCACAGCCGAGACCAG
CGAGTGGTCGGCTGTGGCGGACGGACGCCTGTTGCCTGAGCGGCCCGTCCCCGGCAGTACGGTGCAGGTGCTCACGAAGG
TGCCCGTGAGTGTGCGCTTTGGCGAGCGCGACTACCCGAGCTTCGAAATCGACAAAGGGCGCTGGCGGGTCCTGGTGCCG
CTCTCGGCCCTGCTCAAACCCGGCGAGTATCCACTGGAGGTGACCGCCGACCAAGAGACCCGCACGACGGTGCCGCTGAC
CATCTACCCCCGCAGCTTCGCCGTGCAGCGCTTGCGCCTGCCCAGGGACCGCGCCGCCCTGGAGGCCACCCCGACCGAAG
AAGCGGCCATCGGCGCCGCTTTGCGCACGGTGAGTCCTGTGCAGCTGTGGCAGCCTTCCTTTCGCCGCCCGAGCGGCGGC
CGGATCTCGAGCGGCTTTGGTCTGCGGCGCACCTACAACGGCGTCTGGGCCGCGGGCTACTACCACCGCGGTCTTGATTT
TGCCGCTCCCGCCGGTGCCGGGGTGATCGCCCCGGCCGCGGGCCGCGTGGCCCTGGTGGGCACCACCCAGCGCGGTTTTC
GCCTGCACGGCAACACCGTCGTGCTCGACCACGGCCAGGGGGTAACGAGCATCTACATTCACCTGTCGCGCATTCTGGTG
CGGCAAGGAGAAACAGTCAAGGCGGGCCAACCGATCGCCAAAGTGGGCAGCACCGGCCGGGCGAGCGGCCCGCACCTGCA
CTGGGGAATCTACGCCCACGCCGTCGCGGTCGATCCGGGCGAGTGGCTGGCCGGACGCATCTGCTGCCGGGTGGCCGCCA
ACTTCGGCGGCAGTGCCGGGGATACCCGATAA

Upstream 100 bases:

>100_bases
AGGGCGATACCGTAGCCGGCTGGTTTATCCAGACCATCGCTGAAGATCAGGTCGTCGTGGTGCAAAACGACCGGCAGCAG
ATTTTGAAAGTAGGCAACTG

Downstream 100 bases:

>100_bases
TTTGCTTATGCAAGTTTCCGTTTTCCACACACCTGAACTGGTCCCCGAGGGAACGCCCGACTGCGCCGTCGCCGTCGACG
TGCTGCGCGCCACCTCCACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRRGLAGTAVAVGLWALTAGPATAETSEWSAVADGRLLPERPVPGSTVQVLTKVPVSVRFGERDYPSFEIDKGRWRVLVP
LSALLKPGEYPLEVTADQETRTTVPLTIYPRSFAVQRLRLPRDRAALEATPTEEAAIGAALRTVSPVQLWQPSFRRPSGG
RISSGFGLRRTYNGVWAAGYYHRGLDFAAPAGAGVIAPAAGRVALVGTTQRGFRLHGNTVVLDHGQGVTSIYIHLSRILV
RQGETVKAGQPIAKVGSTGRASGPHLHWGIYAHAVAVDPGEWLAGRICCRVAANFGGSAGDTR

Sequences:

>Translated_303_residues
MRRGLAGTAVAVGLWALTAGPATAETSEWSAVADGRLLPERPVPGSTVQVLTKVPVSVRFGERDYPSFEIDKGRWRVLVP
LSALLKPGEYPLEVTADQETRTTVPLTIYPRSFAVQRLRLPRDRAALEATPTEEAAIGAALRTVSPVQLWQPSFRRPSGG
RISSGFGLRRTYNGVWAAGYYHRGLDFAAPAGAGVIAPAAGRVALVGTTQRGFRLHGNTVVLDHGQGVTSIYIHLSRILV
RQGETVKAGQPIAKVGSTGRASGPHLHWGIYAHAVAVDPGEWLAGRICCRVAANFGGSAGDTR
>Mature_303_residues
MRRGLAGTAVAVGLWALTAGPATAETSEWSAVADGRLLPERPVPGSTVQVLTKVPVSVRFGERDYPSFEIDKGRWRVLVP
LSALLKPGEYPLEVTADQETRTTVPLTIYPRSFAVQRLRLPRDRAALEATPTEEAAIGAALRTVSPVQLWQPSFRRPSGG
RISSGFGLRRTYNGVWAAGYYHRGLDFAAPAGAGVIAPAAGRVALVGTTQRGFRLHGNTVVLDHGQGVTSIYIHLSRILV
RQGETVKAGQPIAKVGSTGRASGPHLHWGIYAHAVAVDPGEWLAGRICCRVAANFGGSAGDTR

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=119, Percent_Identity=42.0168067226891, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87082174, Length=102, Percent_Identity=40.1960784313725, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789099, Length=133, Percent_Identity=35.3383458646617, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082297, Length=101, Percent_Identity=41.5841584158416, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 32270; Mature: 32270

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRGLAGTAVAVGLWALTAGPATAETSEWSAVADGRLLPERPVPGSTVQVLTKVPVSVRF
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHEEECCEEEEE
GERDYPSFEIDKGRWRVLVPLSALLKPGEYPLEVTADQETRTTVPLTIYPRSFAVQRLRL
CCCCCCCEEECCCCEEEEEEHHHHCCCCCCCEEEECCCCCCEEEEEEECCHHHHHHHHCC
PRDRAALEATPTEEAAIGAALRTVSPVQLWQPSFRRPSGGRISSGFGLRRTYNGVWAAGY
CCCHHHEECCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCEECCCCCCEEECCCEEEECE
YHRGLDFAAPAGAGVIAPAAGRVALVGTTQRGFRLHGNTVVLDHGQGVTSIYIHLSRILV
EECCCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECCEEEEECCCCHHHHHHHHHHHHH
RQGETVKAGQPIAKVGSTGRASGPHLHWGIYAHAVAVDPGEWLAGRICCRVAANFGGSAG
HCCCEECCCCCHHHHCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCC
DTR
CCC
>Mature Secondary Structure
MRRGLAGTAVAVGLWALTAGPATAETSEWSAVADGRLLPERPVPGSTVQVLTKVPVSVRF
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHEEECCEEEEE
GERDYPSFEIDKGRWRVLVPLSALLKPGEYPLEVTADQETRTTVPLTIYPRSFAVQRLRL
CCCCCCCEEECCCCEEEEEEHHHHCCCCCCCEEEECCCCCCEEEEEEECCHHHHHHHHCC
PRDRAALEATPTEEAAIGAALRTVSPVQLWQPSFRRPSGGRISSGFGLRRTYNGVWAAGY
CCCHHHEECCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCEECCCCCCEEECCCEEEECE
YHRGLDFAAPAGAGVIAPAAGRVALVGTTQRGFRLHGNTVVLDHGQGVTSIYIHLSRILV
EECCCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECCEEEEECCCCHHHHHHHHHHHHH
RQGETVKAGQPIAKVGSTGRASGPHLHWGIYAHAVAVDPGEWLAGRICCRVAANFGGSAG
HCCCEECCCCCHHHHCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCC
DTR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]