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The map label for this gene is rbpE [H]

Identifier: 37522494

GI number: 37522494

Start: 3120796

End: 3121383

Strand: Direct

Name: rbpE [H]

Synonym: glr2925

Alternate gene names: 37522494

Gene position: 3120796-3121383 (Clockwise)

Preceding gene: 37522492

Following gene: 37522496

Centisome position: 66.98

GC content: 69.22

Gene sequence:

>588_bases
ATGTCCGTTCGACTCTACGTTGGAAATTTGCCCGAAGAGGTCACCCGCCAGGAATTGGAGGCGATTTTCGCCCCCGCCGG
CGAAGTGGTCTCCCTCAAAGTGATTACCGACCGCAAGACCGGCAAGTGCCGGGGCTTTGGTTTTCTGACCGTGTCCACCC
CCGAAGCCGCCGACAGCTTCATCGAGCAATTCAACGGCGTCAGCTTCAAAGATGTCGCCCTGCGCGTCGAGAAGGCCCAG
CCCAAGGCCAAGAGCGACCGCAGCGACGAAGGTGACGGCGAAGCCGCCGCCCCCGCCCCCGCCGTGGCCGCCGGCAGCGA
AGCGACCGAACCGCAGGTGGAGAGCGCCGCTGCTCCCCGCCCCGTCCCGGCCCGCGCCGCCGGTCCGATTAGCACCGGCC
GCCCGCCGATCCGCAAAGTCGACAAAAGCCAGCGCGACCGTCAGGGCGACGGCGGCCGCCGCCAGGGCGACAGCCGCCGC
GATCGGCCAGCGGCCACCACCGTCTCCTCCGACGAGGCCAACCAGCCCGACCCGCGCTGGGCCGACGCCCTGCGCGACAT
TCGCCGCCAATTGACCACCAAGGCCTAG

Upstream 100 bases:

>100_bases
TCCGCATCGAGATCGAGCTGCAAACGAAGGCGGGGCCTTGCGCCTGCGCCTGTCTTTGTCCATGGTTTGTGTTCCTGGTT
CATCGCATTAGGAGTTGCGT

Downstream 100 bases:

>100_bases
GCGCTCCAGACCAGGAACACGGCAATCGAGCGGTCCAGGACTGAATCTCTTCAGCCCTGGACCGCTCGCTTTTGCTCGAT
TGTTTCAAGGAGGGCAAAAT

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MSVRLYVGNLPEEVTRQELEAIFAPAGEVVSLKVITDRKTGKCRGFGFLTVSTPEAADSFIEQFNGVSFKDVALRVEKAQ
PKAKSDRSDEGDGEAAAPAPAVAAGSEATEPQVESAAAPRPVPARAAGPISTGRPPIRKVDKSQRDRQGDGGRRQGDSRR
DRPAATTVSSDEANQPDPRWADALRDIRRQLTTKA

Sequences:

>Translated_195_residues
MSVRLYVGNLPEEVTRQELEAIFAPAGEVVSLKVITDRKTGKCRGFGFLTVSTPEAADSFIEQFNGVSFKDVALRVEKAQ
PKAKSDRSDEGDGEAAAPAPAVAAGSEATEPQVESAAAPRPVPARAAGPISTGRPPIRKVDKSQRDRQGDGGRRQGDSRR
DRPAATTVSSDEANQPDPRWADALRDIRRQLTTKA
>Mature_194_residues
SVRLYVGNLPEEVTRQELEAIFAPAGEVVSLKVITDRKTGKCRGFGFLTVSTPEAADSFIEQFNGVSFKDVALRVEKAQP
KAKSDRSDEGDGEAAAPAPAVAAGSEATEPQVESAAAPRPVPARAAGPISTGRPPIRKVDKSQRDRQGDGGRRQGDSRRD
RPAATTVSSDEANQPDPRWADALRDIRRQLTTKA

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4557493, Length=75, Percent_Identity=42.6666666666667, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI14149675, Length=75, Percent_Identity=42.6666666666667, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI118600973, Length=78, Percent_Identity=32.0512820512821, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=78, Percent_Identity=42.3076923076923, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17532167, Length=142, Percent_Identity=28.8732394366197, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17508567, Length=76, Percent_Identity=40.7894736842105, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17137710, Length=75, Percent_Identity=41.3333333333333, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 20878; Mature: 20747

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRLYVGNLPEEVTRQELEAIFAPAGEVVSLKVITDRKTGKCRGFGFLTVSTPEAADSF
CEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHH
IEQFNGVSFKDVALRVEKAQPKAKSDRSDEGDGEAAAPAPAVAAGSEATEPQVESAAAPR
HHHHCCCCHHHHHEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
PVPARAAGPISTGRPPIRKVDKSQRDRQGDGGRRQGDSRRDRPAATTVSSDEANQPDPRW
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
ADALRDIRRQLTTKA
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVRLYVGNLPEEVTRQELEAIFAPAGEVVSLKVITDRKTGKCRGFGFLTVSTPEAADSF
EEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHH
IEQFNGVSFKDVALRVEKAQPKAKSDRSDEGDGEAAAPAPAVAAGSEATEPQVESAAAPR
HHHHCCCCHHHHHEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
PVPARAAGPISTGRPPIRKVDKSQRDRQGDGGRRQGDSRRDRPAATTVSSDEANQPDPRW
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
ADALRDIRRQLTTKA
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]