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The map label for this gene is rbcR [H]

Identifier: 37522425

GI number: 37522425

Start: 3045772

End: 3046677

Strand: Reverse

Name: rbcR [H]

Synonym: gll2856

Alternate gene names: 37522425

Gene position: 3046677-3045772 (Counterclockwise)

Preceding gene: 37522426

Following gene: 37522424

Centisome position: 65.39

GC content: 51.43

Gene sequence:

>906_bases
ATGAATTTTGAACAGCTTAGGGTGTTCGTAGCTGTTGCTGAGCATCTAAACTTTACCCGTGCAGCAGAGAAACTTTCCCT
CTCGCAGCCGGCGGTTAGTTCGGCGGTAGCGGCCCTCGAAACGTACTACAAGGTTCCTCTGTTTAATCGAATGGGCAGGC
GAATCGAGCTGACAAACTCGGGACAGCTTTTGTTGACTGAAGCCCACAAAGTCATTCAAGAAATCACGACGATCGAAAGC
AAACTCCGCGAAACCAAAAGCTTGCAAAGGGGAGAACTGTACATTGGCAGCAGTCAGACAGTAGCAAGCTGGTGGCTGCC
GCCGCAACTGCAAAGATTCCGTCAGCAATATCCGAAAGTGCAACTCAAAGTGGTTTCTGGCAACACAGAAGAAATCGGCG
AGTGGGTTGCGGCAGGCCAGGTTGACATCGGCCTGGTTGAGCGGGAGGTTCGAAACAAGTCATTGACCTTCAATGCGATT
GGAGGCGACAAGATGGCATTTGTTGTCGGCAAACAACATCCTTTGTGGGAGCGAACGAATATCGGGCTGGACGAGCTGAA
AAGCACGCGATGGGTATTGCGTGAGTCTGGCTCGGATGTCCGAAAATTTTTCGAATACCTGTGTTTTACCCACAACATCG
ACGCCGACAAACTCGACATCGCTCTCGAATTGCCCAATTGCGCGATGACGAAAAGAGCTGCGGAAGTTGGAGCTGGGGTG
GCGCTGCTGTCGGTGCCCTTGGTCGAGAAAGAAATCAAATGGGGTGCCCTTCGCAGCCTGAATACGGTTTTGAAGCCAGT
GATGGAACGCAATTTTTATTTGATTAGCCGCAATAGCCAGGTCACGTCACCGGCCGTCAAGGCATTTTCTTCGTTGGTGC
GTCAGAGCACCCCGGTCAATGTATAG

Upstream 100 bases:

>100_bases
CAGATTAAATCGTTGAAAGCCGAGGCCCAATGTTTATTCATCTGTGATGCTGCTGCTGCCATCTAGATTACTTGCCTGCA
AACAAATTCGGGAGTAAACG

Downstream 100 bases:

>100_bases
CGTTTTGAGAGACGTAGCCTATCGCTACGCCGCAACGGACTCTCAGAGCATAGAGGCCGTTTTGCGACTGCTCGAAATTT
CAGATTTGACAAAGGAGAGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MNFEQLRVFVAVAEHLNFTRAAEKLSLSQPAVSSAVAALETYYKVPLFNRMGRRIELTNSGQLLLTEAHKVIQEITTIES
KLRETKSLQRGELYIGSSQTVASWWLPPQLQRFRQQYPKVQLKVVSGNTEEIGEWVAAGQVDIGLVEREVRNKSLTFNAI
GGDKMAFVVGKQHPLWERTNIGLDELKSTRWVLRESGSDVRKFFEYLCFTHNIDADKLDIALELPNCAMTKRAAEVGAGV
ALLSVPLVEKEIKWGALRSLNTVLKPVMERNFYLISRNSQVTSPAVKAFSSLVRQSTPVNV

Sequences:

>Translated_301_residues
MNFEQLRVFVAVAEHLNFTRAAEKLSLSQPAVSSAVAALETYYKVPLFNRMGRRIELTNSGQLLLTEAHKVIQEITTIES
KLRETKSLQRGELYIGSSQTVASWWLPPQLQRFRQQYPKVQLKVVSGNTEEIGEWVAAGQVDIGLVEREVRNKSLTFNAI
GGDKMAFVVGKQHPLWERTNIGLDELKSTRWVLRESGSDVRKFFEYLCFTHNIDADKLDIALELPNCAMTKRAAEVGAGV
ALLSVPLVEKEIKWGALRSLNTVLKPVMERNFYLISRNSQVTSPAVKAFSSLVRQSTPVNV
>Mature_301_residues
MNFEQLRVFVAVAEHLNFTRAAEKLSLSQPAVSSAVAALETYYKVPLFNRMGRRIELTNSGQLLLTEAHKVIQEITTIES
KLRETKSLQRGELYIGSSQTVASWWLPPQLQRFRQQYPKVQLKVVSGNTEEIGEWVAAGQVDIGLVEREVRNKSLTFNAI
GGDKMAFVVGKQHPLWERTNIGLDELKSTRWVLRESGSDVRKFFEYLCFTHNIDADKLDIALELPNCAMTKRAAEVGAGV
ALLSVPLVEKEIKWGALRSLNTVLKPVMERNFYLISRNSQVTSPAVKAFSSLVRQSTPVNV

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=301, Percent_Identity=29.5681063122924, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=27.8350515463918, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=25.9515570934256, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790399, Length=277, Percent_Identity=25.2707581227437, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788887, Length=193, Percent_Identity=33.6787564766839, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI87082132, Length=303, Percent_Identity=28.0528052805281, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1788748, Length=308, Percent_Identity=26.9480519480519, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1786401, Length=308, Percent_Identity=29.8701298701299, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787879, Length=196, Percent_Identity=31.6326530612245, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787530, Length=189, Percent_Identity=30.6878306878307, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1789173, Length=285, Percent_Identity=28.0701754385965, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1790208, Length=247, Percent_Identity=27.1255060728745, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87081904, Length=209, Percent_Identity=28.7081339712919, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788296, Length=247, Percent_Identity=25.5060728744939, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=24.4318181818182, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1789204, Length=250, Percent_Identity=24.4, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI2367136, Length=308, Percent_Identity=21.7532467532468, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789506, Length=195, Percent_Identity=24.6153846153846, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788297, Length=173, Percent_Identity=26.5895953757225, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=127, Percent_Identity=32.2834645669291, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786508, Length=182, Percent_Identity=27.4725274725275, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787128, Length=129, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789639, Length=264, Percent_Identity=26.5151515151515, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787589, Length=266, Percent_Identity=26.6917293233083, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33847; Mature: 33847

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFEQLRVFVAVAEHLNFTRAAEKLSLSQPAVSSAVAALETYYKVPLFNRMGRRIELTNS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCEEEECCC
GQLLLTEAHKVIQEITTIESKLRETKSLQRGELYIGSSQTVASWWLPPQLQRFRQQYPKV
CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEECCCHHHHHHHHHCCCE
QLKVVSGNTEEIGEWVAAGQVDIGLVEREVRNKSLTFNAIGGDKMAFVVGKQHPLWERTN
EEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCCCCCC
IGLDELKSTRWVLRESGSDVRKFFEYLCFTHNIDADKLDIALELPNCAMTKRAAEVGAGV
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCH
ALLSVPLVEKEIKWGALRSLNTVLKPVMERNFYLISRNSQVTSPAVKAFSSLVRQSTPVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
V
C
>Mature Secondary Structure
MNFEQLRVFVAVAEHLNFTRAAEKLSLSQPAVSSAVAALETYYKVPLFNRMGRRIELTNS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCEEEECCC
GQLLLTEAHKVIQEITTIESKLRETKSLQRGELYIGSSQTVASWWLPPQLQRFRQQYPKV
CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEECCCHHHHHHHHHCCCE
QLKVVSGNTEEIGEWVAAGQVDIGLVEREVRNKSLTFNAIGGDKMAFVVGKQHPLWERTN
EEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCCCCCC
IGLDELKSTRWVLRESGSDVRKFFEYLCFTHNIDADKLDIALELPNCAMTKRAAEVGAGV
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCH
ALLSVPLVEKEIKWGALRSLNTVLKPVMERNFYLISRNSQVTSPAVKAFSSLVRQSTPVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA