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The map label for this gene is apcE [H]

Identifier: 37522375

GI number: 37522375

Start: 2984809

End: 2986998

Strand: Direct

Name: apcE [H]

Synonym: glr2806

Alternate gene names: 37522375

Gene position: 2984809-2986998 (Clockwise)

Preceding gene: 37522371

Following gene: 37522376

Centisome position: 64.07

GC content: 61.37

Gene sequence:

>2190_bases
ATGAGCGCGACCACGTACGACTGGCGCAAGGTGATCGATTCTATCAAGATTGAAGACCCGGTCAAGCCGGGCGATTTTGC
GAATTTTCTCGACATGGCCCGGGGTATCGAGTCGCGCACCGGCGTCTGGAGCATTTCCTATGAGAGCCTGCGCACCCTGG
GTCCACCCGAGGGCGGTATGCTGCGGCCTGCCGTGGGCGGTACCGCCGAGGCGGCGGCTCAAAAGCAACTGGGTATCACC
GCCGTGGCCCCCGCCTCCGTGGTCGAATTGCGCCCCAACGCCAGTGAAGAAGACTTGCAGGGCGTGCTGCGGGCCGTCTA
CCGCCAGGTGCTCGGCAACACCTACGTCATGGAAAGCGAAAGACCCACCCAGGCCGAGTCGCTGCTGCGCAACGGCTCGA
TCAGCGTGCGCGAATTCGTCCGCCGCATCGCCAAGTCGGACCTTTACAAAGAGCGCTTTTTCAACAAAGCCTCCAACAAC
CGCTTCATCGAGCTCAATTTCAAGCATCTGCTGGGCCGCGCCCCCTACAACCACGGTGAGATTCAGGAGCACTTCGGGCT
CTACCACAAGGCCGGCTACGACGTGGAAATCGACTCCTACATCGATTCTGATGAGTACATCGAAACTTTCGGCGAGAATA
TCGTTCCTTATTTCCGGGGCTTCAAGTACCAGACCAACCAGTCCGCGGGCGGCTTCCCGCGCATGGTCAAACTCTGGGGC
GGCGACGCGGGTTCCGACACCGACCGCGGCAAGAATGGCCAGCGCACCCTCGTCACCACCAAAGATCTGATTGGCCCTAC
CAAGATATTCGTGCCCTTCGTGGCACCCGGTCGCGACGCGGACATGGTGTCCGGGGACTACACGCGCCTTGCTTTCGGCC
TCAGCGGTGAAGCGGCGGCCCAGCGGCAGTTGGGCATCGCCTCGGTGGCCCCCGCGCCGATCTGCCAGCTGCGCCCCAAC
GCCAGTGAAGAAGACTTGCAGGGCGTGCTGCGGGCCGTCTACCGCCAGGTGCTCGGCAACACCTACGTCATGGAAAGCGA
AAGACCCACCCAGGCCGAGTCGCTGCTGCGCAACGGCTCGATCAGCGTGCGTGAATTCGTCCGCCGCATCGCCAAGTCGG
ACCTTTACAAAGAGCGCTTTTTCAACAAAGCCTCCAACAACCGCTTCATCGAGCTCAATTTCAAGCATCTGCTGGGCCGC
GCCCCCTACAACCACGGTGAGATTCAGGAGCACTTCGGGCTCTACCACAAGGCCGGCTACGACGTGGAAATCGACTCCTA
CATCGATTCTGATGAGTACATCGAAACTTTCGGCGAGAATATCGTTCCTTATTTCCGGGGCTTCAAGTACCAGACCAACC
AGTCCGCGGGCGGCTTCCCGCGCATGGTCAAACTCTGGGGCGGCGACGCGGGTTCCGATACCGACCGCGCGACGGGTGGA
CAGCGCACCCTCGTCACCACCCGCGAGTTGGTGAAAACGCTTCCTCTGTTGACGGAGATCCCGGCTGTACCGGCTACCCG
TGGGTTCGAGCAAGTGCTCAACCAGCTGAAGCGTCCCGCCCCCGGCGGCACGGGTGAGGCGCAGGGACAAAAGCAACTGG
GTATCACCGCCGTGGCTCCCGCGCCGATCTGCCAGCTGCGCCCCAACGCCAGTGAAGAAGACTTGCAGGGCGTGCTGCGG
GCCGTCTACCGCCAGGTGCTCGGCAACACCTACGTCATGGAAAGCGAAAGACCCACCCAGGCCGAGTCGCTGCTGCGCAA
CGGCTCGATCAGCGTGCGTGAATTCGTCCGCCGCATCGCCAAGTCGGACCTTTACAAAGAGCGCTTTTTCAACAAAGCCT
CCAACAACCGCTTCATCGAGCTCAATTTCAAGCATCTGCTGGGCCGCGCCCCCTACAACCACGGTGAGATTCAGGAGCAC
TTCGGGCTCTACCACAAGGCCGGCTACGACGCGGAGATCGACTCCTACATCGATTCTGATGAGTACTTGCTGACCTTCGG
TGAGGATGTGGTGCCCTACTTCCGGGGCTTCAAGTACCAGACCAACCAGTCCGCGGGCGGCTTCCCGCGCTTCACCAAAC
TCTACGGTGGCGACGCGGGTTCCGACACCGACCGCGGCAAGAATGGCCAGCGTACCCTCGTCACCACCAAAGATCTGGTG
GTCTCCGGCCAGTTCAGTAAGCCTGTCTAA

Upstream 100 bases:

>100_bases
GTAGTTCCCCGGCGGCGGGATCCGCGCGGGTGGTGCGCTTGCGCCGTTCGGGGAATTGACGATAATGCAAACAGATCAGC
GTGTCTAGCAGGAGAACCGC

Downstream 100 bases:

>100_bases
GTCCTGCCGGCACAAACGGGTCGCGATTTTGCCGACCCGTTTGTGCAACCCATGTTACGATTGTTAAACTGCATCGCATA
TTTTTGTAGTGAGGCTTCAC

Product: putative phycobiliprotein linker

Products: NA

Alternate protein names: Core-membrane linker protein; L-CM 92; Phycobilisome 120 kDa linker polypeptide, core [H]

Number of amino acids: Translated: 729; Mature: 728

Protein sequence:

>729_residues
MSATTYDWRKVIDSIKIEDPVKPGDFANFLDMARGIESRTGVWSISYESLRTLGPPEGGMLRPAVGGTAEAAAQKQLGIT
AVAPASVVELRPNASEEDLQGVLRAVYRQVLGNTYVMESERPTQAESLLRNGSISVREFVRRIAKSDLYKERFFNKASNN
RFIELNFKHLLGRAPYNHGEIQEHFGLYHKAGYDVEIDSYIDSDEYIETFGENIVPYFRGFKYQTNQSAGGFPRMVKLWG
GDAGSDTDRGKNGQRTLVTTKDLIGPTKIFVPFVAPGRDADMVSGDYTRLAFGLSGEAAAQRQLGIASVAPAPICQLRPN
ASEEDLQGVLRAVYRQVLGNTYVMESERPTQAESLLRNGSISVREFVRRIAKSDLYKERFFNKASNNRFIELNFKHLLGR
APYNHGEIQEHFGLYHKAGYDVEIDSYIDSDEYIETFGENIVPYFRGFKYQTNQSAGGFPRMVKLWGGDAGSDTDRATGG
QRTLVTTRELVKTLPLLTEIPAVPATRGFEQVLNQLKRPAPGGTGEAQGQKQLGITAVAPAPICQLRPNASEEDLQGVLR
AVYRQVLGNTYVMESERPTQAESLLRNGSISVREFVRRIAKSDLYKERFFNKASNNRFIELNFKHLLGRAPYNHGEIQEH
FGLYHKAGYDAEIDSYIDSDEYLLTFGEDVVPYFRGFKYQTNQSAGGFPRFTKLYGGDAGSDTDRGKNGQRTLVTTKDLV
VSGQFSKPV

Sequences:

>Translated_729_residues
MSATTYDWRKVIDSIKIEDPVKPGDFANFLDMARGIESRTGVWSISYESLRTLGPPEGGMLRPAVGGTAEAAAQKQLGIT
AVAPASVVELRPNASEEDLQGVLRAVYRQVLGNTYVMESERPTQAESLLRNGSISVREFVRRIAKSDLYKERFFNKASNN
RFIELNFKHLLGRAPYNHGEIQEHFGLYHKAGYDVEIDSYIDSDEYIETFGENIVPYFRGFKYQTNQSAGGFPRMVKLWG
GDAGSDTDRGKNGQRTLVTTKDLIGPTKIFVPFVAPGRDADMVSGDYTRLAFGLSGEAAAQRQLGIASVAPAPICQLRPN
ASEEDLQGVLRAVYRQVLGNTYVMESERPTQAESLLRNGSISVREFVRRIAKSDLYKERFFNKASNNRFIELNFKHLLGR
APYNHGEIQEHFGLYHKAGYDVEIDSYIDSDEYIETFGENIVPYFRGFKYQTNQSAGGFPRMVKLWGGDAGSDTDRATGG
QRTLVTTRELVKTLPLLTEIPAVPATRGFEQVLNQLKRPAPGGTGEAQGQKQLGITAVAPAPICQLRPNASEEDLQGVLR
AVYRQVLGNTYVMESERPTQAESLLRNGSISVREFVRRIAKSDLYKERFFNKASNNRFIELNFKHLLGRAPYNHGEIQEH
FGLYHKAGYDAEIDSYIDSDEYLLTFGEDVVPYFRGFKYQTNQSAGGFPRFTKLYGGDAGSDTDRGKNGQRTLVTTKDLV
VSGQFSKPV
>Mature_728_residues
SATTYDWRKVIDSIKIEDPVKPGDFANFLDMARGIESRTGVWSISYESLRTLGPPEGGMLRPAVGGTAEAAAQKQLGITA
VAPASVVELRPNASEEDLQGVLRAVYRQVLGNTYVMESERPTQAESLLRNGSISVREFVRRIAKSDLYKERFFNKASNNR
FIELNFKHLLGRAPYNHGEIQEHFGLYHKAGYDVEIDSYIDSDEYIETFGENIVPYFRGFKYQTNQSAGGFPRMVKLWGG
DAGSDTDRGKNGQRTLVTTKDLIGPTKIFVPFVAPGRDADMVSGDYTRLAFGLSGEAAAQRQLGIASVAPAPICQLRPNA
SEEDLQGVLRAVYRQVLGNTYVMESERPTQAESLLRNGSISVREFVRRIAKSDLYKERFFNKASNNRFIELNFKHLLGRA
PYNHGEIQEHFGLYHKAGYDVEIDSYIDSDEYIETFGENIVPYFRGFKYQTNQSAGGFPRMVKLWGGDAGSDTDRATGGQ
RTLVTTRELVKTLPLLTEIPAVPATRGFEQVLNQLKRPAPGGTGEAQGQKQLGITAVAPAPICQLRPNASEEDLQGVLRA
VYRQVLGNTYVMESERPTQAESLLRNGSISVREFVRRIAKSDLYKERFFNKASNNRFIELNFKHLLGRAPYNHGEIQEHF
GLYHKAGYDAEIDSYIDSDEYLLTFGEDVVPYFRGFKYQTNQSAGGFPRFTKLYGGDAGSDTDRGKNGQRTLVTTKDLVV
SGQFSKPV

Specific function: Has intrinsic bilin lyase activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Anchors the phycobilisome perpendicularly to the cytoplasmic surface of the thylakoid membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 PBS-linker domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR001297
- InterPro:   IPR012128
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly; PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 81443; Mature: 81312

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATTYDWRKVIDSIKIEDPVKPGDFANFLDMARGIESRTGVWSISYESLRTLGPPEGGM
CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCCCCCE
LRPAVGGTAEAAAQKQLGITAVAPASVVELRPNASEEDLQGVLRAVYRQVLGNTYVMESE
ECCCCCCCHHHHHHHHCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEECCC
RPTQAESLLRNGSISVREFVRRIAKSDLYKERFFNKASNNRFIELNFKHLLGRAPYNHGE
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCH
IQEHFGLYHKAGYDVEIDSYIDSDEYIETFGENIVPYFRGFKYQTNQSAGGFPRMVKLWG
HHHHHCHHHHCCCCEEECCCCCCHHHHHHHCCCHHHHHCCCEEECCCCCCCCCCEEEEEC
GDAGSDTDRGKNGQRTLVTTKDLIGPTKIFVPFVAPGRDADMVSGDYTRLAFGLSGEAAA
CCCCCCCCCCCCCCEEEEEHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHH
QRQLGIASVAPAPICQLRPNASEEDLQGVLRAVYRQVLGNTYVMESERPTQAESLLRNGS
HHHCCCHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHCCC
ISVREFVRRIAKSDLYKERFFNKASNNRFIELNFKHLLGRAPYNHGEIQEHFGLYHKAGY
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCHHHHHHCHHHHCCC
DVEIDSYIDSDEYIETFGENIVPYFRGFKYQTNQSAGGFPRMVKLWGGDAGSDTDRATGG
CEEECCCCCCHHHHHHHCCCHHHHHCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCC
QRTLVTTRELVKTLPLLTEIPAVPATRGFEQVLNQLKRPAPGGTGEAQGQKQLGITAVAP
CEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHCCEEEECC
APICQLRPNASEEDLQGVLRAVYRQVLGNTYVMESERPTQAESLLRNGSISVREFVRRIA
CCCEECCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHH
KSDLYKERFFNKASNNRFIELNFKHLLGRAPYNHGEIQEHFGLYHKAGYDAEIDSYIDSD
HHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCHHHHHHCHHHHCCCCCHHHHHCCCC
EYLLTFGEDVVPYFRGFKYQTNQSAGGFPRFTKLYGGDAGSDTDRGKNGQRTLVTTKDLV
CEEEECCCHHHHHHHCCCEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEECCEE
VSGQFSKPV
EECCCCCCC
>Mature Secondary Structure 
SATTYDWRKVIDSIKIEDPVKPGDFANFLDMARGIESRTGVWSISYESLRTLGPPEGGM
CCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCCCCCE
LRPAVGGTAEAAAQKQLGITAVAPASVVELRPNASEEDLQGVLRAVYRQVLGNTYVMESE
ECCCCCCCHHHHHHHHCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEECCC
RPTQAESLLRNGSISVREFVRRIAKSDLYKERFFNKASNNRFIELNFKHLLGRAPYNHGE
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCH
IQEHFGLYHKAGYDVEIDSYIDSDEYIETFGENIVPYFRGFKYQTNQSAGGFPRMVKLWG
HHHHHCHHHHCCCCEEECCCCCCHHHHHHHCCCHHHHHCCCEEECCCCCCCCCCEEEEEC
GDAGSDTDRGKNGQRTLVTTKDLIGPTKIFVPFVAPGRDADMVSGDYTRLAFGLSGEAAA
CCCCCCCCCCCCCCEEEEEHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHH
QRQLGIASVAPAPICQLRPNASEEDLQGVLRAVYRQVLGNTYVMESERPTQAESLLRNGS
HHHCCCHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHCCC
ISVREFVRRIAKSDLYKERFFNKASNNRFIELNFKHLLGRAPYNHGEIQEHFGLYHKAGY
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCHHHHHHCHHHHCCC
DVEIDSYIDSDEYIETFGENIVPYFRGFKYQTNQSAGGFPRMVKLWGGDAGSDTDRATGG
CEEECCCCCCHHHHHHHCCCHHHHHCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCC
QRTLVTTRELVKTLPLLTEIPAVPATRGFEQVLNQLKRPAPGGTGEAQGQKQLGITAVAP
CEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHCCEEEECC
APICQLRPNASEEDLQGVLRAVYRQVLGNTYVMESERPTQAESLLRNGSISVREFVRRIA
CCCEECCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHH
KSDLYKERFFNKASNNRFIELNFKHLLGRAPYNHGEIQEHFGLYHKAGYDAEIDSYIDSD
HHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCHHHHHHCHHHHCCCCCHHHHHCCCC
EYLLTFGEDVVPYFRGFKYQTNQSAGGFPRFTKLYGGDAGSDTDRGKNGQRTLVTTKDLV
CEEEECCCHHHHHHHCCCEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEECCEE
VSGQFSKPV
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2107546 [H]