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The map label for this gene is ydcM [C]

Identifier: 37522311

GI number: 37522311

Start: 2911776

End: 2913137

Strand: Direct

Name: ydcM [C]

Synonym: glr2742

Alternate gene names: 37522311

Gene position: 2911776-2913137 (Clockwise)

Preceding gene: 37522304

Following gene: 37522315

Centisome position: 62.5

GC content: 58.3

Gene sequence:

>1362_bases
ATGCTCATGACATACCAATACCGCCTGAAGCCAACGGCTGCCCAGAGCGAATCGATGGAGCGCTGGTTGCAGCTTCTATG
CAAACAGTACAACTACCGATTGGCGCAGCGCTTCGACTGGATGGAGCACCACCGCTGTTCGCTCAACGCCTGTTCTATCC
GCTCCTGCAGCATTGCCACCCCGGCCGATGCGCCGGATTACTCAAGCCAGAAGCGCGATCTGAGGGAGACCAAAAAGCGC
TTTCCCGAATACGCGCAGATCTATTCCCAGGTACTCCAGGACTGCATCGGGCGGGTCAAGAAGACCTTCGACCGGTTCGT
CAAAAACGACACCTCCGGCAACCGCTCCGGCCGTCCTCGCTTCAAGAGTCAGTCGCGCTACCGCTCGTTCACCTACCCGC
AGATCCTGGCTGGCTGGCTGGAGGGCAACCGCATCCGTCTGCCGAAGCTGGGTTGCTTAAAAATCTGGATGCACCGGCCA
CTACCGCCGGACTTTGCGGTGAAGACCGCCACAATCACCCGCAAAGCCGATCACTGGTACATCGCCTTTGTGCTGGAAAA
CAAAGACGCCTCCACAGCCGAGCCGGTCATCACCCCGACCGTCCAGAATACGACGGGCTTCGATCTGGGCCTCGAATCTT
TCCTGGTTACCGACAAAGCCGACAGAGTCGAGATTCCTCACTTTCACCGCCGGGCCGAAGCCAGACTTGCCCGTCTGCAC
AAGCGCCAATCGCGCACGCGCAAAGGCTCGTCCGCGCGCCGCAAGGCCAACCGCAAACTTTCCCGCGCCTACCAGAAGGT
AGTCAATCAGCGCAAAGACTTTCACTACAAGACTGCCTGGCAACTGATCAGAACCAGCGAGGTGATCGCCCATGAAGACC
TGACCGTCCAGAATATGGCGAGGACCAACCTTGCCAAGAGCATCTACGACGCCGGTTGGAGCACATTTATCGCCATTCTG
ACGCGCAAAGCTGCAAACGCTGGCGTGCGCACGATTGCGGTGAACCCAGCCGGTACCACTTTGCGGTGTAGCCGTTGTGA
TCGCGATGTTCCCAAGCAGCTCTCGGATCGATGGCACGAGTGCGCCTGCGGCATCCGCCTCCACCGGGACCACAACGCCG
CCATCAACATCCGCAACTTCGCCATTGCCAGGGCGGTGGGTCATCACGACCTGGTAAAAAACGCTCGACGGAGTCCGCTC
CGGCGGGAAACCTGCGCTGAACTCTCTGAAGCGTCGGCAAAGGGCAGATGTCACGAACCGCGTGCTCTGTACTGCACCGG
ACGCTTTAGCAAGTTTGTAGCAGGAAGATGTCACGAAACCTATGCTCTGTATTCCCAAAAGGATGTTAGAACAATAGAAT
AG

Upstream 100 bases:

>100_bases
TCGCTTCCCTCAAACACACGAGATCTCACCTCAGTCTTTCGTTTATATAGGGTGATTTCCCCGCTTTGACAAAAACAGGG
CAATATGATAATTTGTCCAT

Downstream 100 bases:

>100_bases
ATATACTAATTTGGCATGTGTAAGTGAGTAAAAATGCTTGTGAAGCGCCCCCGGATGGACTCGAACCATCGCACACAGGT
TAGGAACCCGATGCTCTATC

Product: putative transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MLMTYQYRLKPTAAQSESMERWLQLLCKQYNYRLAQRFDWMEHHRCSLNACSIRSCSIATPADAPDYSSQKRDLRETKKR
FPEYAQIYSQVLQDCIGRVKKTFDRFVKNDTSGNRSGRPRFKSQSRYRSFTYPQILAGWLEGNRIRLPKLGCLKIWMHRP
LPPDFAVKTATITRKADHWYIAFVLENKDASTAEPVITPTVQNTTGFDLGLESFLVTDKADRVEIPHFHRRAEARLARLH
KRQSRTRKGSSARRKANRKLSRAYQKVVNQRKDFHYKTAWQLIRTSEVIAHEDLTVQNMARTNLAKSIYDAGWSTFIAIL
TRKAANAGVRTIAVNPAGTTLRCSRCDRDVPKQLSDRWHECACGIRLHRDHNAAINIRNFAIARAVGHHDLVKNARRSPL
RRETCAELSEASAKGRCHEPRALYCTGRFSKFVAGRCHETYALYSQKDVRTIE

Sequences:

>Translated_453_residues
MLMTYQYRLKPTAAQSESMERWLQLLCKQYNYRLAQRFDWMEHHRCSLNACSIRSCSIATPADAPDYSSQKRDLRETKKR
FPEYAQIYSQVLQDCIGRVKKTFDRFVKNDTSGNRSGRPRFKSQSRYRSFTYPQILAGWLEGNRIRLPKLGCLKIWMHRP
LPPDFAVKTATITRKADHWYIAFVLENKDASTAEPVITPTVQNTTGFDLGLESFLVTDKADRVEIPHFHRRAEARLARLH
KRQSRTRKGSSARRKANRKLSRAYQKVVNQRKDFHYKTAWQLIRTSEVIAHEDLTVQNMARTNLAKSIYDAGWSTFIAIL
TRKAANAGVRTIAVNPAGTTLRCSRCDRDVPKQLSDRWHECACGIRLHRDHNAAINIRNFAIARAVGHHDLVKNARRSPL
RRETCAELSEASAKGRCHEPRALYCTGRFSKFVAGRCHETYALYSQKDVRTIE
>Mature_453_residues
MLMTYQYRLKPTAAQSESMERWLQLLCKQYNYRLAQRFDWMEHHRCSLNACSIRSCSIATPADAPDYSSQKRDLRETKKR
FPEYAQIYSQVLQDCIGRVKKTFDRFVKNDTSGNRSGRPRFKSQSRYRSFTYPQILAGWLEGNRIRLPKLGCLKIWMHRP
LPPDFAVKTATITRKADHWYIAFVLENKDASTAEPVITPTVQNTTGFDLGLESFLVTDKADRVEIPHFHRRAEARLARLH
KRQSRTRKGSSARRKANRKLSRAYQKVVNQRKDFHYKTAWQLIRTSEVIAHEDLTVQNMARTNLAKSIYDAGWSTFIAIL
TRKAANAGVRTIAVNPAGTTLRCSRCDRDVPKQLSDRWHECACGIRLHRDHNAAINIRNFAIARAVGHHDLVKNARRSPL
RRETCAELSEASAKGRCHEPRALYCTGRFSKFVAGRCHETYALYSQKDVRTIE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=344, Percent_Identity=28.1976744186047, Blast_Score=111, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 52394; Mature: 52394

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMTYQYRLKPTAAQSESMERWLQLLCKQYNYRLAQRFDWMEHHRCSLNACSIRSCSIAT
CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PADAPDYSSQKRDLRETKKRFPEYAQIYSQVLQDCIGRVKKTFDRFVKNDTSGNRSGRPR
CCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
FKSQSRYRSFTYPQILAGWLEGNRIRLPKLGCLKIWMHRPLPPDFAVKTATITRKADHWY
CCCHHHHCCCCCHHHHHHHHCCCEEECCCCHHHHHHHCCCCCCCCEEEEEEEEEECCCEE
IAFVLENKDASTAEPVITPTVQNTTGFDLGLESFLVTDKADRVEIPHFHRRAEARLARLH
EEEEEECCCCCCCCCEEECCCCCCCCCCCCHHHHEEECCCCCCCCCHHHHHHHHHHHHHH
KRQSRTRKGSSARRKANRKLSRAYQKVVNQRKDFHYKTAWQLIRTSEVIAHEDLTVQNMA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHH
RTNLAKSIYDAGWSTFIAILTRKAANAGVRTIAVNPAGTTLRCSRCDRDVPKQLSDRWHE
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEEHHHCCCCHHHHHHHHHHH
CACGIRLHRDHNAAINIRNFAIARAVGHHDLVKNARRSPLRRETCAELSEASAKGRCHEP
HHCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
RALYCTGRFSKFVAGRCHETYALYSQKDVRTIE
CEEEEECCHHHHHHCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLMTYQYRLKPTAAQSESMERWLQLLCKQYNYRLAQRFDWMEHHRCSLNACSIRSCSIAT
CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PADAPDYSSQKRDLRETKKRFPEYAQIYSQVLQDCIGRVKKTFDRFVKNDTSGNRSGRPR
CCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
FKSQSRYRSFTYPQILAGWLEGNRIRLPKLGCLKIWMHRPLPPDFAVKTATITRKADHWY
CCCHHHHCCCCCHHHHHHHHCCCEEECCCCHHHHHHHCCCCCCCCEEEEEEEEEECCCEE
IAFVLENKDASTAEPVITPTVQNTTGFDLGLESFLVTDKADRVEIPHFHRRAEARLARLH
EEEEEECCCCCCCCCEEECCCCCCCCCCCCHHHHEEECCCCCCCCCHHHHHHHHHHHHHH
KRQSRTRKGSSARRKANRKLSRAYQKVVNQRKDFHYKTAWQLIRTSEVIAHEDLTVQNMA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHH
RTNLAKSIYDAGWSTFIAILTRKAANAGVRTIAVNPAGTTLRCSRCDRDVPKQLSDRWHE
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEEHHHCCCCHHHHHHHHHHH
CACGIRLHRDHNAAINIRNFAIARAVGHHDLVKNARRSPLRRETCAELSEASAKGRCHEP
HHCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
RALYCTGRFSKFVAGRCHETYALYSQKDVRTIE
CEEEEECCHHHHHHCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]