Click here to switch to the map view.

The map label for this gene is ycf52

Identifier: 37521920

GI number: 37521920

Start: 2513367

End: 2513843

Strand: Reverse

Name: ycf52

Synonym: gvip324

Alternate gene names: NA

Gene position: 2513843-2513367 (Counterclockwise)

Preceding gene: 37521921

Following gene: 37521919

Centisome position: 53.96

GC content: 61.01

Gene sequence:

>477_bases
ATGAGCTTCTGGAAGCGCCTGTTCACCGGTTCCGACTCCGCCAGCGGCGGGGAGGTCCACAGCAATGTATTCTTCTCGAC
AGACCGCGACATCGACCTCTACGCCCTCGAAGAGCTGTGCGACGCGGTCGGCTGGTCGCGTCGCCCCCTGCGCAAGGTCA
AAAAGGCGATCGACCACAGTTTTTGCGTCATCTCGATGTACGAGCAGCGCGGAGACTTCAAGCAACTGGTAGGTTTCGCC
CGCGCCACCTCCGACCACGCCTTCAACGCCACCATTTGGGATGTCGTGGTTCACCCGGAATTTCAAGGCAAGGGCCTCGG
CCGGGCGATGATGGACCGGATCGTCGCCGAGTTGCGCGCCGCCGACATCAGCAACATCACCCTGTTTGCCGACCCGCACG
TGGTCGATTTCTACCGCCGACTCGGATTTATTCCCGACCCCGAGGGCATCAAGGGCATGTTCTGGTATCCGGATTAG

Upstream 100 bases:

>100_bases
GCCGTTCCTCCTGATGGGCGCGCTCCGAAACAAACGGCAAAATCGTGGGACTATGGCTTTAATGGAATAGCTGTCTCCTC
CTCCACCCGCGCGTTACTCG

Downstream 100 bases:

>100_bases
ACCTGCGCTATCCGCTATACTGAGCACAATTTTTTGGGAACAGTCCATGGCTTCGACGTCCGGGGGCGTTCTGCGCCGTT
CGTTGGGATTGATAGACGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MSFWKRLFTGSDSASGGEVHSNVFFSTDRDIDLYALEELCDAVGWSRRPLRKVKKAIDHSFCVISMYEQRGDFKQLVGFA
RATSDHAFNATIWDVVVHPEFQGKGLGRAMMDRIVAELRAADISNITLFADPHVVDFYRRLGFIPDPEGIKGMFWYPD

Sequences:

>Translated_158_residues
MSFWKRLFTGSDSASGGEVHSNVFFSTDRDIDLYALEELCDAVGWSRRPLRKVKKAIDHSFCVISMYEQRGDFKQLVGFA
RATSDHAFNATIWDVVVHPEFQGKGLGRAMMDRIVAELRAADISNITLFADPHVVDFYRRLGFIPDPEGIKGMFWYPD
>Mature_157_residues
SFWKRLFTGSDSASGGEVHSNVFFSTDRDIDLYALEELCDAVGWSRRPLRKVKKAIDHSFCVISMYEQRGDFKQLVGFAR
ATSDHAFNATIWDVVVHPEFQGKGLGRAMMDRIVAELRAADISNITLFADPHVVDFYRRLGFIPDPEGIKGMFWYPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 N-acetyltransferase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000182
- InterPro:   IPR016181 [H]

Pfam domain/function: PF00583 Acetyltransf_1 [H]

EC number: NA

Molecular weight: Translated: 18000; Mature: 17868

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFWKRLFTGSDSASGGEVHSNVFFSTDRDIDLYALEELCDAVGWSRRPLRKVKKAIDHS
CCHHHHHHCCCCCCCCCCEECCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
FCVISMYEQRGDFKQLVGFARATSDHAFNATIWDVVVHPEFQGKGLGRAMMDRIVAELRA
CEEEEEHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
ADISNITLFADPHVVDFYRRLGFIPDPEGIKGMFWYPD
CCCCCEEEEECCHHHHHHHHCCCCCCCCCCCEEEECCC
>Mature Secondary Structure 
SFWKRLFTGSDSASGGEVHSNVFFSTDRDIDLYALEELCDAVGWSRRPLRKVKKAIDHS
CHHHHHHCCCCCCCCCCEECCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
FCVISMYEQRGDFKQLVGFARATSDHAFNATIWDVVVHPEFQGKGLGRAMMDRIVAELRA
CEEEEEHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
ADISNITLFADPHVVDFYRRLGFIPDPEGIKGMFWYPD
CCCCCEEEEECCHHHHHHHHCCCCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]