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The map label for this gene is rbpD [H]

Identifier: 37521895

GI number: 37521895

Start: 2491795

End: 2492100

Strand: Reverse

Name: rbpD [H]

Synonym: gll2326

Alternate gene names: 37521895

Gene position: 2492100-2491795 (Counterclockwise)

Preceding gene: 37521898

Following gene: 37521894

Centisome position: 53.49

GC content: 63.4

Gene sequence:

>306_bases
GTGACGATATTTGTTGGTAATCTGCCCTTTTCTGCCACCGAGCAGGAAATCGCCGAGGCTTTCGCTGAGTACGGTGAAGT
GAAGTCGGTCAAGATCCCGACCGACCGTGAGAGCGGCCGTCCGCGCGGATTTGCTTTCGTCGACATGGACGAAGCGGCCG
AGGCCAAGGCCATCGAAGAACTGGACGGAGCGACCTGGAATAACCGCGAGCTGCGCGTCAACAAAGCAGAACCCCGCCCC
GACCGCGGCGGCGGTGGTGGTGGAAACCGTGGCGGCGGCGGCGGCGGCCGGGATCGCCGCTACTAA

Upstream 100 bases:

>100_bases
AGTTCACCCAGCTTCCCTGTGCTAGGGTGGAGCAGCCTAGCCAGCGGTAAAGTCACTTTCATGTTCTTTGCGGTTGGTCA
GTTTTTTCCGGAGACATACT

Downstream 100 bases:

>100_bases
AACCCGTGCGAATCGGCGGCCGGTGCAGGACTGTTGCACCGGCCGCCTTGCACCGTTTGCTTGAATTTGCGCCTAGTGGG
CGGTTGCCGGAACGTCTTGC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 101; Mature: 100

Protein sequence:

>101_residues
MTIFVGNLPFSATEQEIAEAFAEYGEVKSVKIPTDRESGRPRGFAFVDMDEAAEAKAIEELDGATWNNRELRVNKAEPRP
DRGGGGGGNRGGGGGGRDRRY

Sequences:

>Translated_101_residues
MTIFVGNLPFSATEQEIAEAFAEYGEVKSVKIPTDRESGRPRGFAFVDMDEAAEAKAIEELDGATWNNRELRVNKAEPRP
DRGGGGGGNRGGGGGGRDRRY
>Mature_100_residues
TIFVGNLPFSATEQEIAEAFAEYGEVKSVKIPTDRESGRPRGFAFVDMDEAAEAKAIEELDGATWNNRELRVNKAEPRPD
RGGGGGGNRGGGGGGRDRRY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=38.1578947368421, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=38.1578947368421, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI4502847, Length=80, Percent_Identity=36.25, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=51.9480519480519, Blast_Score=84, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=46.25, Blast_Score=81, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=45.4545454545455, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6321599, Length=81, Percent_Identity=43.2098765432099, Blast_Score=70, Evalue=4e-14,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=43.421052631579, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10889; Mature: 10758

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIFVGNLPFSATEQEIAEAFAEYGEVKSVKIPTDRESGRPRGFAFVDMDEAAEAKAIEE
CEEEECCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEECCCCHHHHHHHH
LDGATWNNRELRVNKAEPRPDRGGGGGGNRGGGGGGRDRRY
HCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TIFVGNLPFSATEQEIAEAFAEYGEVKSVKIPTDRESGRPRGFAFVDMDEAAEAKAIEE
EEEECCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEECCCCHHHHHHHH
LDGATWNNRELRVNKAEPRPDRGGGGGGNRGGGGGGRDRRY
HCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]