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The map label for this gene is ycf38 [C]

Identifier: 37521737

GI number: 37521737

Start: 2317822

End: 2318706

Strand: Direct

Name: ycf38 [C]

Synonym: gvip302

Alternate gene names: 37521737

Gene position: 2317822-2318706 (Clockwise)

Preceding gene: 37521736

Following gene: 37521739

Centisome position: 49.75

GC content: 62.71

Gene sequence:

>885_bases
ATGGGTAATTCGTTCATTCCGGATAATTCCGCTTCGCTCCCGCTGCGTCAACCGCAGCGCGCCAGGACGGGTTCTTTCGC
CCAGTTTCGCCAGGAGACAATGGCCCTGGCGCGGCGGCTGTTTATCCAGTTGGGGCGGCGACCCTCGGCTTTTGTGGGCA
GCATCATCCAGTCGCTTCTGTGGCTGATGCTGTTCAGTGCCCTGTTTGCCCAGGCCCCCCGGGGCACCTTCGGCATCGAG
GGAGGCTACATCCAGTTTCTGGCGGCGGGGATCATCGTCTTTGCCGCCTTTGGCGGCGCCCTCAACGCCGGGGTGCCCTT
AATATTCGACCGCGAATTCGGCTTTCTCAACCGCCTGCTGGTCGCCCCCCTGGTCTCGCGCACCTCGATCATCTTCGCTT
CGGCGCTGTTTATCGTGAGCACGACGCTGGTACAGGCGGCGGCCATCGGCGCGGTGAGCTTTCTGATGGGTGCCCAGTTC
GCAGGCGGCCTCGAAGGGGCGCTCATCGTCGCCCTGGTCGTAACGCTGTTGGTCTTCGGCATCGCTGCATTGAGCCTGGG
GCTGGCTTTCGTGCTGCCCGGCCACATCGAGATGCTGGCGGCCATCTTCGTCATCAACCTGCCGATGATCTTCGCCAGCA
CCGCCCTGGCACCGATGTCCTTCATGCCCCTATGGCTGCAGTTAGTGGCAAGCGCCAACCCGCTCACCTACGCCATCGAA
CCCATCCGGCATCTGTTTTTGCACAGCAACTGGTCGTTGGCCGATCCGGTTTTGCTGGCCCCCTGGGGTTCGCTGAGCCT
GACGGGCTGCGTGCTGGTGCTGTTGGTCTTCGATGTGGTTGCCATCGCGCTGGTGGGCGGCATGCTCAAGCGGAAACTCG
GTTAA

Upstream 100 bases:

>100_bases
CGGCCAAACGCTCCAGGACGCCGACCTGGCTGCCGGCAGCCCCGGCAAGAAAAAACGCAAGTGAGAGTCCCCTTGACGGC
TCTTTTCGACGGTCGCTTCT

Downstream 100 bases:

>100_bases
ACCCTGTCGTCGCCGATTAGACCGCCGATGCGCTTGAGGATGCGCAGCACGTCGTACAGCTCGTTGCGCCCATAGGAAAA
CAGCGAAAAATCTTCAGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Multidrug Efflux ABC Transporter; ABC-Type Multidrug Transport System Permease Component; ABC Transporter Permease Protein; ABC-2 Type Transporter Superfamily; ABC-2 Type Transport System Permease Protein; Daunorubicin Resistance ABC Transporter Membrane Protein; Multidrug ABC Transporter Permease Protein; ABC-Type Multidrug Transport System ATPase Component; Multidrug ABC Transporter; Drug Exporter ABC Transporter Permease; Daunorubicin Resistance Membrane Protein; ABC Type Transporter Permease Component; Multidrug ABC Transporter Permease Component; ABC-2 Type Tranporter

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MGNSFIPDNSASLPLRQPQRARTGSFAQFRQETMALARRLFIQLGRRPSAFVGSIIQSLLWLMLFSALFAQAPRGTFGIE
GGYIQFLAAGIIVFAAFGGALNAGVPLIFDREFGFLNRLLVAPLVSRTSIIFASALFIVSTTLVQAAAIGAVSFLMGAQF
AGGLEGALIVALVVTLLVFGIAALSLGLAFVLPGHIEMLAAIFVINLPMIFASTALAPMSFMPLWLQLVASANPLTYAIE
PIRHLFLHSNWSLADPVLLAPWGSLSLTGCVLVLLVFDVVAIALVGGMLKRKLG

Sequences:

>Translated_294_residues
MGNSFIPDNSASLPLRQPQRARTGSFAQFRQETMALARRLFIQLGRRPSAFVGSIIQSLLWLMLFSALFAQAPRGTFGIE
GGYIQFLAAGIIVFAAFGGALNAGVPLIFDREFGFLNRLLVAPLVSRTSIIFASALFIVSTTLVQAAAIGAVSFLMGAQF
AGGLEGALIVALVVTLLVFGIAALSLGLAFVLPGHIEMLAAIFVINLPMIFASTALAPMSFMPLWLQLVASANPLTYAIE
PIRHLFLHSNWSLADPVLLAPWGSLSLTGCVLVLLVFDVVAIALVGGMLKRKLG
>Mature_293_residues
GNSFIPDNSASLPLRQPQRARTGSFAQFRQETMALARRLFIQLGRRPSAFVGSIIQSLLWLMLFSALFAQAPRGTFGIEG
GYIQFLAAGIIVFAAFGGALNAGVPLIFDREFGFLNRLLVAPLVSRTSIIFASALFIVSTTLVQAAAIGAVSFLMGAQFA
GGLEGALIVALVVTLLVFGIAALSLGLAFVLPGHIEMLAAIFVINLPMIFASTALAPMSFMPLWLQLVASANPLTYAIEP
IRHLFLHSNWSLADPVLLAPWGSLSLTGCVLVLLVFDVVAIALVGGMLKRKLG

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31260; Mature: 31129

Theoretical pI: Translated: 11.22; Mature: 11.22

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNSFIPDNSASLPLRQPQRARTGSFAQFRQETMALARRLFIQLGRRPSAFVGSIIQSLL
CCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
WLMLFSALFAQAPRGTFGIEGGYIQFLAAGIIVFAAFGGALNAGVPLIFDREFGFLNRLL
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCEEEECCHHHHHHHH
VAPLVSRTSIIFASALFIVSTTLVQAAAIGAVSFLMGAQFAGGLEGALIVALVVTLLVFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
IAALSLGLAFVLPGHIEMLAAIFVINLPMIFASTALAPMSFMPLWLQLVASANPLTYAIE
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
PIRHLFLHSNWSLADPVLLAPWGSLSLTGCVLVLLVFDVVAIALVGGMLKRKLG
HHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GNSFIPDNSASLPLRQPQRARTGSFAQFRQETMALARRLFIQLGRRPSAFVGSIIQSLL
CCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
WLMLFSALFAQAPRGTFGIEGGYIQFLAAGIIVFAAFGGALNAGVPLIFDREFGFLNRLL
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCEEEECCHHHHHHHH
VAPLVSRTSIIFASALFIVSTTLVQAAAIGAVSFLMGAQFAGGLEGALIVALVVTLLVFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
IAALSLGLAFVLPGHIEMLAAIFVINLPMIFASTALAPMSFMPLWLQLVASANPLTYAIE
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
PIRHLFLHSNWSLADPVLLAPWGSLSLTGCVLVLLVFDVVAIALVGGMLKRKLG
HHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA