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The map label for this gene is rbcL

Identifier: 37521725

GI number: 37521725

Start: 2307046

End: 2308470

Strand: Direct

Name: rbcL

Synonym: gvip295

Alternate gene names: 37521725

Gene position: 2307046-2308470 (Clockwise)

Preceding gene: 37521724

Following gene: 37521726

Centisome position: 49.52

GC content: 64.35

Gene sequence:

>1425_bases
GTGTCCTATACGAAGACGCAAGCCAAAGCGGGTTATCAAGCAGGGGTCAAGGACTATCGCCTGACCTACTACACCCCGGA
CTACACGCCCAAGGACACCGATGTCCTGGCGGCGTTCCGCGTCACCCCGCAGCCGGGGGTACCGATCGAGGAAGCGGGCG
CCGCCGTGGCCGCCGAATCTTCCACCGGTACCTGGACGACGGTCTGGACCGACGGCCTCACCGAACTGGACCGCTACAAG
GGCCGCTGCTACGATATCGAGCCGGTGCCGGGCGAAGATAACCAGTGGATCTGCTATATCGCCTACCCGCTCGACCTGTT
CGAAGAAGGTTCGGTCACCAACGTGCTTACCTCGCTGGTGGGCAACGTCTTCGGCTTCAAGGCGCTGCGCGCTTTGCGCC
TGGAGGACATCCGCTTTCCCATCGCCCTGGTGAAGACTTACCAGGGGCCGCCCCACGGCATCGTCGTCGAGCGCGACAAA
ATCAACAAGTACGGCCGTCCGCTCTTGGGCTGCACGATCAAGCCCAAATTGGGCCTTTCTGCCAAGAACTACGGCCGCGC
CGTCTACGAGTGCCTGCGCGGCGGTCTGGACTTTACCAAAGACGACGAAAACATCAATTCGCAGCCCTTCATGCGCTGGC
GCGACCGCTTCTTGTTCGTGCAGGACGCCATCGTCAAGTCCCAGGCGGAGACCGGTGAAATCAAGGGCCACTACCTCAAC
TGCACCGCCGGCACCTGTGAGGAGATGATGGAGCGCGCCGAGTTCGCCAAGGAACTCAAGACGCCCATCATCATGCACGA
CTATCTGACCGGGGGGTTCACCGCCAACACGACCCTGGCCAAGTGGTGCCGCCGCAACGGCATTCTGCTGCACATCCACC
GGGCGATGCACGCCGTCATCGACCGCCAGAAGAACCACGGCATCCACTTCCGGGTGCTCGCCAAGTGCCTGCGCCTGTCG
GGCGGCGACCACATTCACACCGGCACGGTGGTGGGCAAGCTCGAAGGTGAGCGCGCCTCGACGATGGGCTTTGTCGATTT
GCTGCGCGAGGAGCACGTCGAGCGCGATCTTTCGCGCGGCATCTACTTCACCCAGGACTGGGCCTCGATGCCGGGGGTGA
TGGCGGTCGCCTCGGGCGGCATCCACGTCTGGCACATGCCGGCCTTGCTCGACATCTTCGGCGACGACGCCGTGCTGCAG
TTCGGCGGCGGCACCCTGGGTCACCCCTGGGGCAACGCGCCGGGGGCCACGGCCAACCGCGTCGCCCTCGAAGCCTGCGT
CAAGGCCCGCAACGAAGGCCGTGACCTGATGCGCGAAGCGGGCGACATCATCCGCGAAGCGGCGCGCTGGAGCCCCGAGT
TGGCGGCGGCCTGCGAGCTGTGGAAGGAAATCAAGTTCGAGTACGAGGCGGTCGACAAACTCTAG

Upstream 100 bases:

>100_bases
CGGGTTCATCCAGTACTGAAAGCTGGCATTCACGCGCAGTTCATGCAGGTCGCGGGATCTGCAGCGGTTTTGCGCATCTT
TTGCATTGCAGGAGGTCCAC

Downstream 100 bases:

>100_bases
GGCGCCCCTGCGACACCCGGACGCGTCCTATGGATCTCAAGGCGATCACCAAGGCCACGGCAAAAGTGCTGGTAAGCTAC
CTCACCTACCAGGCCGTCCG

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO large subunit

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MSYTKTQAKAGYQAGVKDYRLTYYTPDYTPKDTDVLAAFRVTPQPGVPIEEAGAAVAAESSTGTWTTVWTDGLTELDRYK
GRCYDIEPVPGEDNQWICYIAYPLDLFEEGSVTNVLTSLVGNVFGFKALRALRLEDIRFPIALVKTYQGPPHGIVVERDK
INKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVQDAIVKSQAETGEIKGHYLN
CTAGTCEEMMERAEFAKELKTPIIMHDYLTGGFTANTTLAKWCRRNGILLHIHRAMHAVIDRQKNHGIHFRVLAKCLRLS
GGDHIHTGTVVGKLEGERASTMGFVDLLREEHVERDLSRGIYFTQDWASMPGVMAVASGGIHVWHMPALLDIFGDDAVLQ
FGGGTLGHPWGNAPGATANRVALEACVKARNEGRDLMREAGDIIREAARWSPELAAACELWKEIKFEYEAVDKL

Sequences:

>Translated_474_residues
MSYTKTQAKAGYQAGVKDYRLTYYTPDYTPKDTDVLAAFRVTPQPGVPIEEAGAAVAAESSTGTWTTVWTDGLTELDRYK
GRCYDIEPVPGEDNQWICYIAYPLDLFEEGSVTNVLTSLVGNVFGFKALRALRLEDIRFPIALVKTYQGPPHGIVVERDK
INKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVQDAIVKSQAETGEIKGHYLN
CTAGTCEEMMERAEFAKELKTPIIMHDYLTGGFTANTTLAKWCRRNGILLHIHRAMHAVIDRQKNHGIHFRVLAKCLRLS
GGDHIHTGTVVGKLEGERASTMGFVDLLREEHVERDLSRGIYFTQDWASMPGVMAVASGGIHVWHMPALLDIFGDDAVLQ
FGGGTLGHPWGNAPGATANRVALEACVKARNEGRDLMREAGDIIREAARWSPELAAACELWKEIKFEYEAVDKL
>Mature_473_residues
SYTKTQAKAGYQAGVKDYRLTYYTPDYTPKDTDVLAAFRVTPQPGVPIEEAGAAVAAESSTGTWTTVWTDGLTELDRYKG
RCYDIEPVPGEDNQWICYIAYPLDLFEEGSVTNVLTSLVGNVFGFKALRALRLEDIRFPIALVKTYQGPPHGIVVERDKI
NKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVQDAIVKSQAETGEIKGHYLNC
TAGTCEEMMERAEFAKELKTPIIMHDYLTGGFTANTTLAKWCRRNGILLHIHRAMHAVIDRQKNHGIHFRVLAKCLRLSG
GDHIHTGTVVGKLEGERASTMGFVDLLREEHVERDLSRGIYFTQDWASMPGVMAVASGGIHVWHMPALLDIFGDDAVLQF
GGGTLGHPWGNAPGATANRVALEACVKARNEGRDLMREAGDIIREAARWSPELAAACELWKEIKFEYEAVDKL

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultan

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type I subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBL_GLOVI (Q7NIM7)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_925102.1
- ProteinModelPortal:   Q7NIM7
- SMR:   Q7NIM7
- GeneID:   2600557
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.2156
- HOGENOM:   HBG405441
- OMA:   YTPDYTP
- ProtClustDB:   PRK04208
- BioCyc:   GVIO251221:GLR2156-MONOMER
- BRENDA:   4.1.1.39
- GO:   GO:0009536
- GO:   GO:0009853
- HAMAP:   MF_01338
- InterPro:   IPR020878
- InterPro:   IPR020888
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444
- Gene3D:   G3DSA:3.20.20.110
- Gene3D:   G3DSA:3.30.70.150

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N; SSF51649 RuBisCO_large; SSF54966 RuBisCO_large

EC number: =4.1.1.39

Molecular weight: Translated: 52856; Mature: 52725

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: ACT_SITE 174-174 ACT_SITE 293-293 BINDING 122-122 BINDING 172-172 BINDING 176-176 BINDING 294-294 BINDING 326-326 BINDING 378-378

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYTKTQAKAGYQAGVKDYRLTYYTPDYTPKDTDVLAAFRVTPQPGVPIEEAGAAVAAES
CCCCCHHHHCCHHCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHCCCEEEECC
STGTWTTVWTDGLTELDRYKGRCYDIEPVPGEDNQWICYIAYPLDLFEEGSVTNVLTSLV
CCCCEEEEECCCHHHHHHHCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH
GNVFGFKALRALRLEDIRFPIALVKTYQGPPHGIVVERDKINKYGRPLLGCTIKPKLGLS
HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCC
AKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVQDAIVKSQAETGEIKGHYLN
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
CTAGTCEEMMERAEFAKELKTPIIMHDYLTGGFTANTTLAKWCRRNGILLHIHRAMHAVI
CCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCEEEEHHHHHHHHH
DRQKNHGIHFRVLAKCLRLSGGDHIHTGTVVGKLEGERASTMGFVDLLREEHVERDLSRG
HHHCCCCCHHHHHHHHHHCCCCCEEEECEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
IYFTQDWASMPGVMAVASGGIHVWHMPALLDIFGDDAVLQFGGGTLGHPWGNAPGATANR
EEEEEHHHCCCCEEEEECCCEEEEEHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHH
VALEACVKARNEGRDLMREAGDIIREAARWSPELAAACELWKEIKFEYEAVDKL
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SYTKTQAKAGYQAGVKDYRLTYYTPDYTPKDTDVLAAFRVTPQPGVPIEEAGAAVAAES
CCCCHHHHCCHHCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHCCCEEEECC
STGTWTTVWTDGLTELDRYKGRCYDIEPVPGEDNQWICYIAYPLDLFEEGSVTNVLTSLV
CCCCEEEEECCCHHHHHHHCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH
GNVFGFKALRALRLEDIRFPIALVKTYQGPPHGIVVERDKINKYGRPLLGCTIKPKLGLS
HHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCC
AKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVQDAIVKSQAETGEIKGHYLN
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
CTAGTCEEMMERAEFAKELKTPIIMHDYLTGGFTANTTLAKWCRRNGILLHIHRAMHAVI
CCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCEEEEHHHHHHHHH
DRQKNHGIHFRVLAKCLRLSGGDHIHTGTVVGKLEGERASTMGFVDLLREEHVERDLSRG
HHHCCCCCHHHHHHHHHHCCCCCEEEECEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
IYFTQDWASMPGVMAVASGGIHVWHMPALLDIFGDDAVLQFGGGTLGHPWGNAPGATANR
EEEEEHHHCCCCEEEEECCCEEEEEHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHH
VALEACVKARNEGRDLMREAGDIIREAARWSPELAAACELWKEIKFEYEAVDKL
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 14621292