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The map label for this gene is crtH [H]

Identifier: 37521702

GI number: 37521702

Start: 2284271

End: 2285782

Strand: Reverse

Name: crtH [H]

Synonym: gvip293

Alternate gene names: 37521702

Gene position: 2285782-2284271 (Counterclockwise)

Preceding gene: 37521704

Following gene: 37521701

Centisome position: 49.06

GC content: 66.27

Gene sequence:

>1512_bases
ATGTTCGACGCGATTGTTATCGGCAGCGGCATCGGCGGACTGTGCGCCGGGGCGCTTTTGGCCCGCCACGGCAGACGGGT
GCTCGTCTTGGAAAGCCATACCATCCCCGGCGGGGCGGCCCACAGCTTCAGCCGCCAGGGTTTCCACTTCGATTCGGGGC
CGTCGTTTCACTGCGGTCTTGCCGCTCCCGACAGCCTCAATCCTTTGCGGCTGATCCTGGAGGCGCTCGGAGAAACGATT
CCGGCTATCCCCTACGATCCGTTTGCCGATTACCACTTTCCGGAGGGGCGCTTGGCCGTGCACGGCGAGGCCAAGCGCTA
CCGCGAGGCCATTGCCGCGATCACCCCCCGCGGCGAGCGCGAATTTGCGCGCTTCGAGGCGCGGCTTTTGCCGATGTACG
AGGCGTTGCGCGAGATTCCGATTCTGGCGCTGCGCGCCGATCTGGGCTTGCTCCTCACCCTGCTTGGCCGCTACTTGGGT
CAGACGCTCCGGTTGCTCACCCTGGTGGCCGACCTGCAAAGTTCCACCGGCCAGATTCTCGATCGCGACGTGCGCGACCC
GTGGGTACGCCGCCTGATCGATCTTGAATGTTTCTTGCTCTCGGGGCTCACCGCCCACGGCACCGTCGCCCCGGAGTTCG
CCTTTATGCTCGGGGAGCGCTCCCGCTCGGTGGTCGATTATCCGGTAGGCGGCGGCGGGGCGCTTGTGGAAGCGCTGGTG
CGCGCACTTTGCCGCTGGGGAGGCCGGATTCGTCTGGGAACGCATGTCGAATCGATCCAAGTCGAGCGGGGTCGGGCAGT
TGGGGTGCGGCTGGCGGGCGGCGAGGCGATCCCGGCTCCGGTGGTCATCTCCAACGCCACCCTCTGGGACACCTACACGA
AGCTGCTCCCGGAGGGTTCTTTGAGCCCGTCGTTTTTAAGATCGGCTCTTGGCACCCCTGCCGTCGACAGCTTCATGCAC
CTGCACCTGGGCATCCGCGCCGAGGGTCTCGAAAACCTGAACGGCCACCACGTCGTCGTCCACCGCGAACCGCTCACTGC
CCCCGGTCACACCTGCATGATCTCGATCCCGAGCGTCTGGGAGCCGGCCCTTGCCCCGCCGGGCCATCACGCCGTGCACG
CCTACACGCTGGAGCCGTTCACCGGTTGGCGGCGCGACGAAACTTACCAGACGCGCAAGCGCGAGCGCGCCGGACCGCTC
TGGTCGGCCCTGGAGCGAGTGATCCCCGATCTTCGGGAACGGGTCGTCCTGGAGCTGACCGGTTCGCCCCTCACCCACGC
GCGCTACCTACGCCGCCACCGGGGCACCTACGGCCCGGCGGTGATGCCCGGAATCGGTTCTTTTCCCGCACCCGGCACAC
CGATCCTAGGGCTGTACCGGGTAGGGGACACGACAATCCCAGGTATCGGTGTGCCTGCTGTCGCCGCATCCGCCATTCTC
TGTGTCAATACGTTGGTGCGCCCCGAGGAGAGCGAAGCCCTAATCGAGAAGAGCCTTCCCCTAAGCCGTTGA

Upstream 100 bases:

>100_bases
CCTGTCAGGCCGATTACCCGTCTTGCCATCCAGCGCGCCCCCTGCGCCCGCCCTGCCATTGTGGCAGCCTCGAAGCGTCT
GCTGCTGCGATGATTGAGGC

Downstream 100 bases:

>100_bases
AGGTGATCGCGAACGAAGATTTTTGTCGTGACATCGTCCGGACGTTGCGCTATGCTCGACGTGAGTTGACGAATGGCTAT
GACTCCCGAACCGCAAACCA

Product: hypothetical protein

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 503; Mature: 503

Protein sequence:

>503_residues
MFDAIVIGSGIGGLCAGALLARHGRRVLVLESHTIPGGAAHSFSRQGFHFDSGPSFHCGLAAPDSLNPLRLILEALGETI
PAIPYDPFADYHFPEGRLAVHGEAKRYREAIAAITPRGEREFARFEARLLPMYEALREIPILALRADLGLLLTLLGRYLG
QTLRLLTLVADLQSSTGQILDRDVRDPWVRRLIDLECFLLSGLTAHGTVAPEFAFMLGERSRSVVDYPVGGGGALVEALV
RALCRWGGRIRLGTHVESIQVERGRAVGVRLAGGEAIPAPVVISNATLWDTYTKLLPEGSLSPSFLRSALGTPAVDSFMH
LHLGIRAEGLENLNGHHVVVHREPLTAPGHTCMISIPSVWEPALAPPGHHAVHAYTLEPFTGWRRDETYQTRKRERAGPL
WSALERVIPDLRERVVLELTGSPLTHARYLRRHRGTYGPAVMPGIGSFPAPGTPILGLYRVGDTTIPGIGVPAVAASAIL
CVNTLVRPEESEALIEKSLPLSR

Sequences:

>Translated_503_residues
MFDAIVIGSGIGGLCAGALLARHGRRVLVLESHTIPGGAAHSFSRQGFHFDSGPSFHCGLAAPDSLNPLRLILEALGETI
PAIPYDPFADYHFPEGRLAVHGEAKRYREAIAAITPRGEREFARFEARLLPMYEALREIPILALRADLGLLLTLLGRYLG
QTLRLLTLVADLQSSTGQILDRDVRDPWVRRLIDLECFLLSGLTAHGTVAPEFAFMLGERSRSVVDYPVGGGGALVEALV
RALCRWGGRIRLGTHVESIQVERGRAVGVRLAGGEAIPAPVVISNATLWDTYTKLLPEGSLSPSFLRSALGTPAVDSFMH
LHLGIRAEGLENLNGHHVVVHREPLTAPGHTCMISIPSVWEPALAPPGHHAVHAYTLEPFTGWRRDETYQTRKRERAGPL
WSALERVIPDLRERVVLELTGSPLTHARYLRRHRGTYGPAVMPGIGSFPAPGTPILGLYRVGDTTIPGIGVPAVAASAIL
CVNTLVRPEESEALIEKSLPLSR
>Mature_503_residues
MFDAIVIGSGIGGLCAGALLARHGRRVLVLESHTIPGGAAHSFSRQGFHFDSGPSFHCGLAAPDSLNPLRLILEALGETI
PAIPYDPFADYHFPEGRLAVHGEAKRYREAIAAITPRGEREFARFEARLLPMYEALREIPILALRADLGLLLTLLGRYLG
QTLRLLTLVADLQSSTGQILDRDVRDPWVRRLIDLECFLLSGLTAHGTVAPEFAFMLGERSRSVVDYPVGGGGALVEALV
RALCRWGGRIRLGTHVESIQVERGRAVGVRLAGGEAIPAPVVISNATLWDTYTKLLPEGSLSPSFLRSALGTPAVDSFMH
LHLGIRAEGLENLNGHHVVVHREPLTAPGHTCMISIPSVWEPALAPPGHHAVHAYTLEPFTGWRRDETYQTRKRERAGPL
WSALERVIPDLRERVVLELTGSPLTHARYLRRHRGTYGPAVMPGIGSFPAPGTPILGLYRVGDTTIPGIGVPAVAASAIL
CVNTLVRPEESEALIEKSLPLSR

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI203098013, Length=548, Percent_Identity=25.3649635036496, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 54579; Mature: 54579

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDAIVIGSGIGGLCAGALLARHGRRVLVLESHTIPGGAAHSFSRQGFHFDSGPSFHCGL
CCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECC
AAPDSLNPLRLILEALGETIPAIPYDPFADYHFPEGRLAVHGEAKRYREAIAAITPRGER
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCHH
EFARFEARLLPMYEALREIPILALRADLGLLLTLLGRYLGQTLRLLTLVADLQSSTGQIL
HHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
DRDVRDPWVRRLIDLECFLLSGLTAHGTVAPEFAFMLGERSRSVVDYPVGGGGALVEALV
HHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCHHHHHHHH
RALCRWGGRIRLGTHVESIQVERGRAVGVRLAGGEAIPAPVVISNATLWDTYTKLLPEGS
HHHHHCCCEEEECCCCCEEEECCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHCCCCC
LSPSFLRSALGTPAVDSFMHLHLGIRAEGLENLNGHHVVVHREPLTAPGHTCMISIPSVW
CCHHHHHHHCCCCHHHHHHHHHCCEEECCCCCCCCCEEEEECCCCCCCCCEEEEECCCCC
EPALAPPGHHAVHAYTLEPFTGWRRDETYQTRKRERAGPLWSALERVIPDLRERVVLELT
CCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEEEC
GSPLTHARYLRRHRGTYGPAVMPGIGSFPAPGTPILGLYRVGDTTIPGIGVPAVAASAIL
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
CVNTLVRPEESEALIEKSLPLSR
HHHHHCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MFDAIVIGSGIGGLCAGALLARHGRRVLVLESHTIPGGAAHSFSRQGFHFDSGPSFHCGL
CCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECC
AAPDSLNPLRLILEALGETIPAIPYDPFADYHFPEGRLAVHGEAKRYREAIAAITPRGER
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCHH
EFARFEARLLPMYEALREIPILALRADLGLLLTLLGRYLGQTLRLLTLVADLQSSTGQIL
HHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
DRDVRDPWVRRLIDLECFLLSGLTAHGTVAPEFAFMLGERSRSVVDYPVGGGGALVEALV
HHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCHHHHHHHH
RALCRWGGRIRLGTHVESIQVERGRAVGVRLAGGEAIPAPVVISNATLWDTYTKLLPEGS
HHHHHCCCEEEECCCCCEEEECCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHCCCCC
LSPSFLRSALGTPAVDSFMHLHLGIRAEGLENLNGHHVVVHREPLTAPGHTCMISIPSVW
CCHHHHHHHCCCCHHHHHHHHHCCEEECCCCCCCCCEEEEECCCCCCCCCEEEEECCCCC
EPALAPPGHHAVHAYTLEPFTGWRRDETYQTRKRERAGPLWSALERVIPDLRERVVLELT
CCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEEEC
GSPLTHARYLRRHRGTYGPAVMPGIGSFPAPGTPILGLYRVGDTTIPGIGVPAVAASAIL
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH
CVNTLVRPEESEALIEKSLPLSR
HHHHHCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7592436 [H]